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SRX4528653: DNA-Seq of Phytophthora rubi isolate SCRP249: Liquid grown mycelium
1 ILLUMINA (Illumina MiSeq) run: 9.2M spots, 5.5G bases, 3.6Gb downloads

Design: DNA extracted with Macherey-Nagel NuceloSin Plant II kit, fragmented to 550bp, concentrated with AmpureBeads if necessary, NEBNext end repair, LT Illumina adaptors used
Submitted by: NIAB-EMR Genetics, Genomics and Breeding (NIAB-EMR GGB)
Study: Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly
show Abstracthide Abstract
Investigating the genetic variation between isolates of two closely related pathogen species. By understanding the genetic controls of pathogenicity and variation in virulence phenotypes, the breeding of resistant varieties of the host crop plants can be aided. Comparisons between the two species can also be examined to understand the evolutionary history of these two pathogens and potentially shed light on the appearance of host specificity.
Sample:
SAMN07449690 • SRS3646521 • All experiments • All runs
Library:
Name: SCRP249_Illumina
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 9.2M spots, 5.5G bases, 3.6Gb
Run# of Spots# of BasesSizePublished
SRR76680979,196,5025.5G3.6Gb2019-12-01

ID:
6133470

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