metagenomic RNA-Seq of Notorynchus cepedianus: cerebrospinal fluid - SRA

SRX3821518: metagenomic RNA-Seq of Notorynchus cepedianus: cerebrospinal fluid
1 ILLUMINA (Illumina MiSeq) run: 2.4M spots, 718M bases, 329.5Mb downloads

Design: NEBNext Ultra II RNA Library Prep, via fragmentation of total RNA, reverse transcription, adapter ligation, and indexing and amplification

Submitted by: University of California, San Francisco

Study: Metagenomic sequencing for pathogen detection in Leopard Shark epizootic, San Francisco Bay 2017

PRJNA438541 • SRP136047 • All experiments • All runs

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Metagenomic sequencing was undertaken to identify unknown pathogens affecting sharks of San Francisco Bay. The sequences in this project derive from cerebrospinal fluid of shark species including Leopard Shark (Triakis semifasciata), Great White Shark (Carcharodon carcharias), Soupfin Shark (Galeorhinus galeus), Pacific Angelshark (Squatina californica), and Sevengill Shark (Notorynchus cepedianus). Sequences of a potential pathogen, the ciliate Miamiensis avidus, were identified in these data.

Sample: not applicable

SAMN08720598 • SRS3071346 • All experiments • All runs

Organism: fish metagenome

Library:

Name: SHK2017-S2

Instrument: Illumina MiSeq

Strategy: RNA-Seq

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 2.4M spots, 718M bases, 329.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR6866900	2,393,172	718M	329.5Mb	2019-04-01

ID:: 5258852

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