U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX3493192: RNA-seq of air samples
1 ILLUMINA (Illumina HiSeq 4000) run: 56.4M spots, 15.5G bases, 7.4Gb downloads

Design: air samples collected on filters
Submitted by: Stanford University
Study: Airborne exposures samples Raw sequence reads
show Abstracthide Abstract
Human health is heavily dependent upon environmental exposures, yet the diversity and variation in human environmental exposures is poorly understood. We developed a novel approach to monitor personal airborne biological and chemical exposures (collectively referred to as the exposome) longitudinally with high sensitivity by integrating a wearable device and multiple-omics approaches. By following personal exposomes of 15 individuals for up to 890 days and over 66 distinct geographical locations, we demonstrated that individuals are exposed to over 1000 species across diverse phyla and hundreds of chemical compounds, including insecticides and carcinogens. In aggregate, over 2500 species were identified with great intraspecies diversity. We found that personal biological and chemical exposomes are highly dynamic and vary greatly with geographical locations and seasons, even for individuals located in the same general geographical region. We were able to construct a season-predictive model based on the pan-domain genera profile. Numerous fungi-, plant-, insect-based allergens were detected that vary by season. Integrated analysis of biological and chemical exposomes revealed strong location-dependent relationships. Importantly, we built an exposome interaction cloud and demonstrated the presence of interconnected human- and environment-centric exposomes, depicting extensive inter-species relationships derived from various interacting ecosystems such as human, flora, pets and arthropods. Overall, we describe a method to capture and analyze personal environmental exposures and demonstrate that human exposomes are diverse, dynamic, and spatiotemporally-driven interconnected clouds that have the potential to greatly impact human health.
Sample:
SAMN08216168 • SRS2776793 • All experiments • All runs
Organism: air metagenome
Library:
Name: xinexpo75_I12
Instrument: Illumina HiSeq 4000
Strategy: WGS
Source: METATRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 56.4M spots, 15.5G bases, 7.4Gb
Run# of Spots# of BasesSizePublished
SRR639982256,389,00615.5G7.4Gb2018-09-20

ID:
4858123

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...