Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX2867779: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Johannesburg by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 2.1M spots, 535.2M bases, 222.7Mb downloads

External Id: EXT00261766

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN07163934 • SRS2238155 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Johannesburg

Library:

Name: Salmonella enterica subsp. enterica serovar Johannesburg Nextera XT shotgun

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Johannesburg.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	Bcl2fastq	2.1

Runs: 1 run, 2.1M spots, 535.2M bases, 222.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR5627246	2,086,397	535.2M	222.7Mb	2017-05-30

ID:: 4108060

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