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SRX2834250: Metagenome of Candidatus Accumulibacter enrichment culture
1 ILLUMINA (Illumina HiSeq 4000) run: 52.4M spots, 15.7G bases, 5.6Gb downloads

Design: DNA pair-end library is constructed with insert size of 270bp-300bp. 1.5_g DNA is fragmented by Covaris, then use the Gel-Electrophotometric to test the fragmented DNA. The fragmented DNA is combined with End Repair Mix, incubate at 20ĄC for 30 min. Purify the end-repaired DNA with QIAquick PCR Purification Kit, then add A-Tailing Mix, incubate at 37ĄC for 30 min. Combine the purified Adenylate 3'Ends DNA, Adapter and Ligation Mix, incubate the ligation reaction at 20ĄC for 15 min. Adapter-ligated DNA is selected, recovered and purified. Several rounds of PCR amplification with PCR Primer Cocktail and PCR Master Mix are performed to enrich the Adapter-ligated DNA fragments. The PCR products are selected, recovered and purified again.
Submitted by: Northwestern University
Study: Candidatus Accumulibacter enrichment culture Metagenome
show Abstracthide Abstract
This project focus on a Denitrifying Candidatus Accumulibacter enrichment culture that we've shown to be capable of producing substantial nitrous oxide when nitrite is present as the electron acceptor for denitrification. Shotgun metagenomic sequencing and genome-resolved metagenome analysis were applied to investigate the genomic nitrogen transformation potential for two Accumulibacter genomes as well as flanking bacterial genomes.
Sample:
SAMN06957053 • SRS2208632 • All experiments • All runs
Library:
Name: CANDO_Aug_07
Instrument: Illumina HiSeq 4000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 52.4M spots, 15.7G bases, 5.6Gb
Run# of Spots# of BasesSizePublished
SRR557600252,362,86215.7G5.6Gb2017-12-26

ID:
4070406

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