U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2662122: Whole genome shotgun sequencing of Salmonella enterica by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 5M spots, 1.4G bases, 645.1Mb downloads

External Id: EXT00251453
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN02900240 • SRS2064100 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica Nextera XT shotgun
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10Bcl2fastq2.1
Runs: 1 run, 5M spots, 1.4G bases, 645.1Mb
Run# of Spots# of BasesSizePublished
SRR53668544,963,2141.4G645.1Mb2017-03-22

ID:
3847096

Supplemental Content

Related information

Search details

See more...

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...