Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX2522728: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 533,680 spots, 251.6M bases, 160Mb downloads

External Id: EXT00239343

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

show Abstracthide Abstract

Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN04933273 • SRS1944353 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica subsp. enterica Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 533,680 spots, 251.6M bases, 160Mb

Run	# of Spots	# of Bases	Size	Published
SRR5209174	533,680	251.6M	160Mb	2017-01-27

ID:: 3651443

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity