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SRX2188275: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 2.1M spots, 632.3M bases, 278Mb downloads

External Id: EXT00217279
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN05751709 • SRS1711066 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica subsp. enterica Nextera XT shotgun
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10Bcl2fastq2.1
Runs: 1 run, 2.1M spots, 632.3M bases, 278Mb
Run# of Spots# of BasesSizePublished
SRR42929412,121,252632.3M278Mb2016-09-23

ID:
3183501

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