Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX2008058: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Rubislaw by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 3.8M spots, 1.1G bases, 523.5Mb downloads

External Id: EXT00207496

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

show Abstracthide Abstract

Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN04962037 • SRS1606493 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Rubislaw

Library:

Name: Salmonella enterica subsp. enterica serovar Rubislaw Nextera XT shotgun

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Rubislaw.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	Bcl2fastq	2.1

Runs: 1 run, 3.8M spots, 1.1G bases, 523.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR4012828	3,823,585	1.1G	523.5Mb	2016-08-08

ID:: 2888205

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity