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SRX2008008: Whole genome shotgun sequencing of Salmonella enterica by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 1.1M spots, 324.2M bases, 150Mb downloads

External Id: EXT00207355
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN04961980 • SRS1606443 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica Nextera XT shotgun
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10Bcl2fastq2.1
Runs: 1 run, 1.1M spots, 324.2M bases, 150Mb
Run# of Spots# of BasesSizePublished
SRR40126841,093,098324.2M150Mb2016-08-08

ID:
2888155

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