shotgun metagenome of river sediment sample S12 - SRA

SRX17982648: shotgun metagenome of river sediment sample S12
1 ILLUMINA (Illumina NovaSeq 6000) run: 52.4M spots, 15.8G bases, 4.7Gb downloads

Design: Illumina standard genomic library; 2 x 150 bp

Submitted by: TU Dresden

Study: Metagenomic inventory of the Lockwitzbach River microbiome and resistome

PRJNA892917 • SRP403891 • All experiments • All runs

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We applied shotgun metagenomic sequencing to study the microbiome and the abundance of antimicrobial resistance genes in a moderately polluted mountain river (Lockwitzbach, South-East Germany). In particular, we were interested in (1) the diversity of antibiotic resistance genes, (2) possible relations between resistome and community composition, as well as (3) the impact of wastewater disposal on the prevalence of antimicrobial resistance in the receiving river.

Sample:

SAMN31400023 • SRS15497139 • All experiments • All runs

Organism: sediment metagenome

Library:

Name: NG-18910_S12_lib319470_6339_2

Instrument: Illumina NovaSeq 6000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 52.4M spots, 15.8G bases, 4.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR22000219	52,383,486	15.8G	4.7Gb	2022-10-21

ID:: 24934445

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