Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX1796209: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Hayindogo by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.6M spots, 704.2M bases, 473.7Mb downloads

External Id: EXT00188892

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN04992706 • SRS1464442 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Hayindogo

Library:

Name: Salmonella enterica subsp. enterica serovar Hayindogo Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Hayindogo.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 1.6M spots, 704.2M bases, 473.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR3579416	1,618,418	704.2M	473.7Mb	2016-05-24

ID:: 2569020

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