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SRX16766953: Shotgun metagenomics of soil from a riparian zone
1 ILLUMINA (Illumina NovaSeq 6000) run: 31.9M spots, 9.6G bases, 2.9Gb downloads

Design: Shotgun metagenomics 150bp paired end
Submitted by: Flinders University
Study: Breakout Creek baseline soil microbiome survey 2021
show Abstracthide Abstract
This project involved eDNA-based soil microbiome survey of riparian areas in the lower River Torrens, Adelaide South Australia. Bacterial community (16S V3-V4) and functional potential (shotgun metagenomics) profiling were used to establish baseline data for assessing changes in post-rehabilitation sites and tracking the shift towards local biodiverse reference conditions. Locations included unrestored (Stage 3) sites, previously restored (Stage 2) sites, and upstream reference sites (positive controls).
Sample:
SAMN29862849 • SRS14393698 • All experiments • All runs
Organism: soil metagenome
Library:
Name: PRT1U_M_HFYFKDRXY
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 31.9M spots, 9.6G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR2074668431,947,6149.6G2.9Gb2022-08-02

ID:
23525493

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