Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX1634299: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 1.3M spots, 380.8M bases, 172.2Mb downloads

External Id: EXT00171276

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA186035 • SRP018785 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN03941156 • SRS1340501 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Typhimurium

Library:

Name: Salmonella enterica subsp. enterica serovar Typhimurium Nextera XT v2 shotgun

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT v2 library created for Salmonella enterica subsp. enterica serovar Typhimurium.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	Bcl2fastq	2.1

Runs: 1 run, 1.3M spots, 380.8M bases, 172.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR6690691	1,318,824	380.8M	172.2Mb	2018-02-08

ID:: 2338153

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