RNA-Seq of Ocean Station PAPA epipelagic bacterial community - SRA

SRX15418073: RNA-Seq of Ocean Station PAPA epipelagic bacterial community
1 ILLUMINA (Illumina HiSeq 4000) run: 9.9M spots, 3G bases, 1.1Gb downloads

Design: RNA was extracted with Mirvana kit, with contaminating DNA degraded with Turbo DNase kit. Metatranscripome libraries were generated from these RNA samples using Ovation Complete Prokaryotic RNA-Seq kit and sequenced with Illumina HiSeq 4000.

Submitted by: UNC Chapel Hill

Study: NASA EXPORTS Epilagic Bacterial Community Metagenomes, Metatranscriptomes, and Metagenome-assembled Genomes

PRJNA785333 • SRP353839 • All experiments • All runs

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Bacterial metagenome, metatranscriptome, and metagenome assembled genome data collected at (1) Station PAPA in the Northeastern Pacific High Nutrient Low Chlorophyll (HNLC) zone in August and September 2018 for stage 1 of the NASA EXPORTS project, and (2) the Porcupine Abyssal Plain (PAP) Station in the Northern Atlantic in May 2021 for stage 2 of the NASA EXPORTS project.

Sample: 0.22-5.0um fraction metatranscriptome from Station PAPA, from same CTD cast and depth as FN238 metagenome sequence

SAMN28553798 • SRS13141753 • All experiments • All runs

Organism: marine metagenome

Library:

Name: FN226

Instrument: Illumina HiSeq 4000

Strategy: RNA-Seq

Source: METATRANSCRIPTOMIC

Selection: RANDOM PCR

Layout: PAIRED

Runs: 1 run, 9.9M spots, 3G bases, 1.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR19359331	9,860,746	3G	1.1Gb	2022-05-23

ID:: 21971234

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