U.S. flag

An official website of the United States government


Send to:

Choose Destination

SRX15418073: RNA-Seq of Ocean Station PAPA epipelagic bacterial community
1 ILLUMINA (Illumina HiSeq 4000) run: 9.9M spots, 3G bases, 1.1Gb downloads

Design: RNA was extracted with Mirvana kit, with contaminating DNA degraded with Turbo DNase kit. Metatranscripome libraries were generated from these RNA samples using Ovation Complete Prokaryotic RNA-Seq kit and sequenced with Illumina HiSeq 4000.
Submitted by: UNC Chapel Hill
Study: NASA EXPORTS Epilagic Bacterial Community Metagenomes, Metatranscriptomes, and Metagenome-assembled Genomes
show Abstracthide Abstract
Bacterial metagenome, metatranscriptome, and metagenome assembled genome data collected at (1) Station PAPA in the Northeastern Pacific High Nutrient Low Chlorophyll (HNLC) zone in August and September 2018 for stage 1 of the NASA EXPORTS project, and (2) the Porcupine Abyssal Plain (PAP) Station in the Northern Atlantic in May 2021 for stage 2 of the NASA EXPORTS project.
Sample: 0.22-5.0um fraction metatranscriptome from Station PAPA, from same CTD cast and depth as FN238 metagenome sequence
SAMN28553798 • SRS13141753 • All experiments • All runs
Name: FN226
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Selection: RANDOM PCR
Layout: PAIRED
Runs: 1 run, 9.9M spots, 3G bases, 1.1Gb
Run# of Spots# of BasesSizePublished


Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...