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SRX1586887: Whole genome shotgun sequencing of Salmonella enterica by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 430,326 spots, 213.2M bases, 136.7Mb downloads

External Id: EXT00164426
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN04450999 • SRS1297441 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 430,326 spots, 213.2M bases, 136.7Mb
Run# of Spots# of BasesSizePublished
SRR3173632430,326213.2M136.7Mb2016-02-16

ID:
2241341

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