Lymph node metagenome from patient with lymphadenopathy (suspected Ki... - SRA

SRX1543122: Lymph node metagenome from patient with lymphadenopathy (suspected Kimura disease)
1 ILLUMINA (Illumina MiSeq) run: 940,298 spots, 326.3M bases, 172.7Mb downloads

Design: A Lymph node was extracted from a patient that was diagnosed with angiolymphoid hyperplasia with eosinophilia or Kimura disease. The lymph node was homogenized and viral particles were prepared using a CsCl gradient and ultracentrifugation. Total DNA from the viral particles was sequenced by shotgun and human polyomavirus 6 was found in the sequenced metagenome.

Submitted by: Aix Marseille University

Study: Human microbiome and virome metagenomics

PRJNA309648 • SRP068830 • All experiments • All runs

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This bioproject concentrates metagenomic studies from modern and ancient human samples performed at the University of Aix-Marseille. Most projects were conducted to analyze the presence of human pathogens but we might also include datasets from human microbiomes and viromes.

Sample: Lymph node metagenome from patient with lymphadenopathy (suspected Kimura disease)

SAMN04437558 • SRS1259630 • All experiments • All runs

Organism: human metagenome

Library:

Name: LymphNode-metagenome

Instrument: Illumina MiSeq

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 940,298 spots, 326.3M bases, 172.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR3115161	940,298	326.3M	172.7Mb	2016-02-08

ID:: 2186365

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