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SRX1143486: Whole genome shotgun sequencing of Salmonella enterica str. FDA00009329 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.6M spots, 739.3M bases, 417.3Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN03975972 • SRS1029796 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica str. FDA00009329 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. FDA00009329.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1.6M spots, 739.3M bases, 417.3Mb
Run# of Spots# of BasesSizePublished
SRR21565701,622,844739.3M417.3Mb2015-08-12

ID:
1665773

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