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SRX4395489: Miseq of nifH: seawater
1 ILLUMINA (Illumina MiSeq) run: 44,740 spots, 19.3M bases, 7.6Mb downloads

Design: Pair-end (PE) reads obtained from Miseq sequencing. were assembled into one single sequence. The quality control were conducted using Trimmomatic. The reads with length below 50 bp were removed. Different samples were separated according to the barcode and primer adaptors.
Submitted by: Second Institute of Oceanography
Study: Dominance of unicellular N2 fixation in the western tropical North Pacific Ocean (WTNP) during 2012 and 2013
show Abstracthide Abstract
Our understanding of a major exogenous new nitrogen sources to the global ocean, N2 fixation, in the rapidly changing western tropical North Pacific Ocean (WTNP) is yet limited. We conducted measurements of N2 fixation rate (157 N isotope tracer assay) in 2012 (July-September) and the diazotroph community structure (using the molecular method) in 2013 (May-June), which first spanned a large spatial range (13–20°N, 120–160°E) in the WTNP. Our independent evidences from both cruises show the dominance of unicellular N2 fixation, either for in situ N2 fixation activity or diazotroph community structure, over majority of the WTNP surface waters during the sampling periods. Moreover, a shift in the diazotrophic composition from unicellular cyanobacteria Crocosphaera watsonii-dominated to Trichodesmium spp. dominated toward the western boundary current (Kuroshio) was also observed in 2013. We propose that nutrient availability may have played a major role in regulating the biogeography of N2 fixation. The role of N2 fixation in biogeochemical cycling and ecosystem function in this climate change-vulnerable region calls for further investigations.
Sample: 50m
SAMN09659102 • SRS3550669 • All experiments • All runs
Library:
Name: P11-2
Instrument: Illumina MiSeq
Strategy: WGA
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 44,740 spots, 19.3M bases, 7.6Mb
Run# of Spots# of BasesSizePublished
SRR752714644,74019.3M7.6Mb2019-01-01

ID:
5972664

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