Bacterial community of Oculina patagonica - SRA

SRX3204147: Bacterial community of Oculina patagonica
1 ILLUMINA (Illumina MiSeq) run: 133,294 spots, 79.1M bases, 53.4Mb downloads

Design: Genomic DNA was isolated and 16S gene amplicons were generated using the 27F/518R primer set. Amplicons were sequenced on Illumina MiSeq at MR DNA (Shallowater, Texas, USA). Files provided are the raw data. Illumina MiSeq files were downloaded from BaseSpace and processed using the Fastq Processor program from MR DNA to split by sample. Barcode sequence: CTACGCTG, Primer forward sequence: AGRGTTTGATCMTGGCTCAG, Primer reverse sequence: GTATTACCGCGGCTGCTGG.

Submitted by: Centre Scientifique de Monaco

Study: Oculina patagonica - microbiome (16S rRNA) and diazotrophs (nifH) - Raw sequence reads

PRJNA408046 • SRP118527 • All experiments • All runs

show Abstracthide Abstract

This project aimed to study the nitrogen fixation and translocation processes in the Mediterranean coral Oculina patagonica. Overall bacterial communities (16S rRNA gene) and diazotroph communities (nifH) were investigated

Sample: Sample of the mucus of Oculina patagonica. Maintained in aquaria at Centre Scientifique de Monaco for 3 weeks. Amplicon sequencing of bacterial 16S rRNA gene.

SAMN07675304 • SRS2530397 • All experiments • All runs

Organism: coral metagenome

Library:

Name: Coral.Mucus5_16S

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 133,294 spots, 79.1M bases, 53.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR6057916	133,294	79.1M	53.4Mb	2018-03-31

ID:: 4511025

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity