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SRX2992517: 16S rRNA gene amplicon from individual particle
1 ILLUMINA (Illumina MiSeq) run: 33,540 spots, 20.1M bases, 10.1Mb downloads

Design: Individual sinking particles were collected using net traps deployed at 150 m in the North Pacific Subtropical Gyre, observed and picked using a dissection microscope, and their associated community assessed using 16S rRNA gene amplicon sequencing. Nitrogen-fixers were identified by sequencing of the nifH gene, encoding a subunit of the nitrogenase enzyme.
Submitted by: University of California Santa Cruz
Study: Diverse diazotrophs on sinking marine particles
show Abstracthide Abstract
Sinking particles transport carbon and nutrients from the surface ocean into the deep sea and are considered hot spots for bacterial diversity and activity. In the oligotrophic oceans, nitrogen (N2)-fixing organisms are an important source of new N but the extent to which these organisms are present and exported on sinking particles is not well known. Sinking particles were collected using net traps deployed at 150 m in the North Pacific Subtropical Gyre, observed and picked using a dissection microscope. The associated community was assessed using 16S rRNA gene amplicon sequencing. N2-fixers were identified by sequencing of the nifH gene, encoding a subunit of the nitrogenase enzyme.
Sample: 16S rRNA
SAMN07303110 • SRS2344459 • All experiments • All runs
Library:
Name: N29CED2
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 33,540 spots, 20.1M bases, 10.1Mb
Run# of Spots# of BasesSizePublished
SRR581418733,54020.1M10.1Mb2017-07-10

ID:
4263407

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