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SRX2398913: Leaves stages B and D source Streptomyces and M_alphitoides replicate 3
1 ILLUMINA (Illumina HiSeq 2000) run: 15.6M spots, 3.1G bases, 2Gb downloads

Design: Tru-Seq v2 was used to produce sequences with a read length of 100 bp from paired-end libraries (average insert size 200 bp) which were sequenced using an Illumina HiSeq 2000.
Submitted by: Helmholtz-Centre for Environmental Research - UFZ
Study: Quercus robur cultivar:DF159 Transcriptome or Gene expression
show Abstracthide Abstract
Rhizobacteria are known to induce defense responses in plants without causing disease symptoms, resulting in increased resistance to plant pathogens. This study investigated how Streptomyces sp. strain AcH 505 suppressed oak powdery mildew infection in pedunculate oak, by analyzing RNA-Seq data from singly- and co-inoculated oaks. We found that this Streptomyces strain elicited a systemic defense response in oak that was, in part, enhanced upon pathogen challenge. In addition to induction of the jasmonic acid/ethylene–dependent pathway, the RNA-Seq data suggests the participation of the salicylic acid–dependent pathway. Transcripts related to tryptophan, phenylalanine, and phenylpropanoid biosynthesis were enriched and phenylalanine ammonia lyase activity increased, indicating that priming by Streptomyces spp. in pedunculate oak shares some determinants with the Pseudomonas- Arabidopsis system. Photosynthesis-related transcripts were depleted in response to powdery mildew infection, but AcH 505 alleviated this inhibition, which suggested that there is a fitness benefit for primed plants upon pathogen challenge. This study offers novel insights into the mechanisms of priming by actinobacteria and highlights their capacity to activate plant defense responses in the absence of pathogen challenge.
Sample: With these biosamples it was investigated how Streptomyces sp. strain AcH 505 suppressed oak powdery mildew infection in pedunculate oak, with RNA-Seq data from singly- and co-inoculated oaks.
SAMN06112368 • SRS1839830 • All experiments • All runs
Organism: Quercus robur
Library:
Name: SM54B
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 15.6M spots, 3.1G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR508071815,622,7503.1G2Gb2016-12-11

ID:
3488800

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