"Landscape of genomic diversity and trait discovery in soybean, Pekin... - SRA

SRX1149858: "Landscape of genomic diversity and trait discovery in soybean, Peking"
1 ILLUMINA (Illumina Genome Analyzer II) run: 94.6M spots, 17G bases, 11Gb downloads

Design: We extracted genomic DNA from 106 soybean lines using paired-end sequencing libraries with insert sizes of around 500 bp and generated about 2Tb clean data after filtering low quality reads and duplicate reads.

Submitted by: University of Missouri

Study: Glycine max Genome sequencing

PRJNA289660 • SRP062245 • All experiments • All runs

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We have re-sequenced 106 soybean germplasm lines representing wild type, land races and elite lines to an average of 17x sequencing depth . This is part of the landscape analysis of genome wide genetic variation and association of major domestication and agronomic traits in soybean.

Sample: HN002

SAMN03856842 • SRS1034556 • All experiments • All runs

Organism: Glycine max

Library:

Name: Peking

Instrument: Illumina Genome Analyzer II

Strategy: WGS

Source: GENOMIC

Selection: unspecified

Layout: PAIRED

Spot descriptor:

1 forward91 reverse

Links:

NCBI link: NCBI Entrez (pubmed)

Runs: 1 run, 94.6M spots, 17G bases, 11Gb

Run	# of Spots	# of Bases	Size	Published
SRR2163294	94,629,592	17G	11Gb	2016-04-25

ID:: 1673929

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