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SRX11670776: RepSeq of human sorted immune subsets
1 ILLUMINA (NextSeq 500) run: 2,933 spots, 885,766 bases, 481,535b downloads

Design: Total RNA was isolated using the RNeasy mini kit (Qiagen) according to the manufacturers instructions. In all experiments described here, cDNA libraries were obtained using 5-RACE with unique molecular identifiers (UMI) (20) using Human TCR profiling kit (MiLaboratory LLC). Libraries were sequenced on Illumina NextSeq 500 using 300 cycle reagent kit, paired-end 150 + 150 nt mode. UMI is encoded in read with barcode tggtatcaacgcagagtNNNNtNNNNtNNNN, where N coresponds to UMI themself
Submitted by: Shemyakin-Ovchinnikov Institute of bioorganic chemistry RAS
Study: Altered features of the TCR repertoire of naive Treg subset in X-linked agammaglobulinemia
show Abstracthide Abstract
The interrelation of T and B-cell compartments at the T cell formation may be critical for balanced immune response. Primary B cell immunodeficiency (X-linked agammaglobulinemia, XLA) represents a model to explore the B cell impact on basic T cell features. We found the prominent alterations of the TCR repertoires of the naive regulatory T cells (nTreg) in XLA patients. At the transcriptome level, XLA nTreg showed increased expression of genes specific for APC and myeloid cells. Our findings indicate an active involvement of the B-cell population in nTreg homeostasis, revealing an intriguing new aspect in adaptive immunity.
Sample:
SAMN20604627 • SRS9702892 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Y1_8N_rep1_1
Instrument: NextSeq 500
Strategy: AMPLICON
Source: TRANSCRIPTOMIC
Selection: RACE
Layout: PAIRED
Runs: 1 run, 2,933 spots, 885,766 bases, 481,535b
Run# of Spots# of BasesSizePublished
SRR153683632,933885,766481,535b2021-08-09

ID:
15586724

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