Oak roots no treatment - SRA

SRX383906: Oak roots no treatment
1 ILLUMINA (Illumina HiSeq 2000) run: 35.5M spots, 7.1G bases, 5.1Gb downloads

Design: Tru-Seq v2 was used to produce sequences with a read length of 100 bp from paired-end libraries (average insert size 400 bp) which were sequenced using an Illumina HiSeq 2000.

Submitted by: HELMHOLTZ-CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

Study: Quercus robur strain:DF159 Transcriptome or Gene expression

PRJNA229948 • SRP033331 • All experiments • All runs

show Abstracthide Abstract

Oaks (Quercus spp.) are major forest trees in the northern hemisphere which host many biotic interactions. Molecular investigation of these interactions is limited by fragmentary genome data. We synthesized beneficial and detrimental biotic interactions between microorganisms, animals, and a clone of Quercus robur, DF159, prepared cDNA libraries from leaves and roots, and analysed oak gene expression.

Sample: Roots-No treatment_Replicate 1

SAMN02418706 • SRS507881 • All experiments • All runs

Organism: Quercus robur

Library:

Name: FROOT1

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: PolyA

Layout: PAIRED

Spot descriptor:

1 forward101 reverse

Runs: 1 run, 35.5M spots, 7.1G bases, 5.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR1040521	35,484,706	7.1G	5.1Gb	2014-04-15

ID:: 550947

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