U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX22874739: Whole genome sequencing of Mus musculus adult male spleen with germline ERV-GFP intgeration
1 ILLUMINA (Illumina NovaSeq 6000) run: 351.9M spots, 105.6G bases, 32.8Gb downloads

Design: DNA was randomly sheared into short fragments. The obtained fragments were end repaired, A-tailed and further ligated with Illumina adapters. The fragments were size selected, PCR amplified, and purified. The library was checked with Qubit and real-time PCR for quantification and bioanalyzer for size distribution detection.
Submitted by: Philipps-Universitat Marburg
Study: Activation, control and T-bet+ B cell-mediated immune surveillance of endogenous retroviruses
show Abstracthide Abstract
Endogenous retroviruses (ERVs) are an integral part of the mammalian genome. The role of immune control of ERVs in general is poorly defined as is their role as anti-cancer immune targets or drivers of autoimmune disease. We generated mouse-strains where Moloney-Murine Leukemia Virus tagged with GFP (ERV-GFP) infected the murine germline. This enabled us to analyze the role of genetic, epigenetic and cell intrinsic restriction factors in ERV activation and control. Spleen DNA of a EGT-315 B6 mouse was analyzed to confirm the germline ERV-GFP intgeration. We identified an autoreactive B cell response against the neo-self/ERV antigen GFP as a key mechanism of ERV control. Although ERVs are a part of the genome they break immune tolerance, induce immune surveillance against ERV-derived self-antigens and shape the hosts immune response.
Sample: genomic insertion of ERV-GFP
SAMN38798973 • SRS19847858 • All experiments • All runs
Organism: Mus musculus
Library:
Name: EGT315B6_EKDN230038788
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 351.9M spots, 105.6G bases, 32.8Gb
Run# of Spots# of BasesSizePublished
SRR27194646351,860,018105.6G32.8Gb2023-12-13

ID:
30927817

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...