Illumina MiSeq sequencing; qiita_ptid_9326:10424.AS988.O - SRA

The following terms were not found in SRA: Octadecanoyl, N-Octadecanoyl-D-phenylalanine.

ERX4394446: Illumina MiSeq sequencing; qiita_ptid_9326:10424.AS988.O
1 ILLUMINA (Illumina MiSeq) run: 27,133 spots, 4.1M bases, 2.4Mb downloads

Design: saliva form a study from LIBR

Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)

Study: Paulus Tulsa Study

PRJEB39840 • ERP123404 • All experiments • All runs

show Abstracthide Abstract

Paulus depression cohort collected in Tulsa, OK

Sample: 10424.AS988.O; Paulus LIBR

SAMEA7184001 • ERS4944243 • All experiments • All runs

Organism: human oral metagenome

Library:

Name: 10424.AS988.O

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Construction protocol: Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4

Experiment attributes: (show all 28 attributes...) (hide...)

barcode: CGGATCTAGTGT

center_name: LIBR

center_project_name: LIBR_SU_oral_study

extraction_robot: N/A

extractionkit_lot: N/A

linker: GT

mastermix_lot: 453873

orig_prep_id: 4004

pcr_primers: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT

plating: LDG

primer: GTGTGYCAGCMGCCGCGGTAA

primer_date: 42817

primer_plate: 5

processing_robot: Lucy

run_center: UCSDMI

run_date: 7/24/17

run_prefix: Paulus_LIBR_11-16_S1_L001

runid: 170724_M05314_0018_000000000-BBB5F

sample_plate: Paulus_LIBR_Plate_15

sequencing_meth: Sequencing by synthesis

target_gene: 16S rRNA

target_subfragment: V4

tm1000_8_tool: N/A

tm300_8_tool: 316322F

tm50_8_tool: 116078F

water_lot: RNBF7110

well_description: Paulus_LIBR_Plate_15_AS988_A12

well_id: A12

Runs: 1 run, 27,133 spots, 4.1M bases, 2.4Mb

Run	# of Spots	# of Bases	Size	Published
ERR4454075	27,133	4.1M	2.4Mb	2021-10-01

ID:: 16723989

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