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ERX3187362: Illumina MiSeq sequencing; qiita_ptid_6189:11176.1x.2.Dust.D12
1 ILLUMINA (Illumina MiSeq) run: 14,442 spots, 2.2M bases, 1.4Mb downloads

Design: comparison of triplicate vs single PCR reactions - Knight lab samples
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
show Abstracthide Abstract
Conventional wisdom holds that PCR amplification for sequencing should employ pooled replicate reactions to reduce bias due to jackpot effects and chimera formation. However, modern amplicon data analysis employs methods that may be less sensitive to such artifacts. Here we directly compare results from single versus triplicate reactions for 16S amplicon sequencing and find no significant impact of adopting a less labor-intensive single-reaction protocol.
Sample: 11176.1x.2.Dust.D12; triplicate_test
SAMEA5340998 • ERS3147170 • All experiments • All runs
Organism: dust metagenome
Library:
Name: 11176.1x.2.Dust.D12
Instrument: Illumina MiSeq
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4
Experiment attributes: (show all 11 attributes...) (hide...)
barcode: AGCCTGGTACCT
center_name: UCSDMI
center_project_name: UCSD triplicate testing
linker: GT
pcr_primers: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT
run_center: UCSDMI
run_date: 4/21/17
runid: 170421_M05314_0005_000000000-B539Y
sequencing_meth: Sequencing by synthesis
target_gene: 16S rRNA
target_subfragment: V4
Runs: 1 run, 14,442 spots, 2.2M bases, 1.4Mb
Run# of Spots# of BasesSizePublished
ERR315830014,4422.2M1.4Mb2020-02-07

ID:
10041103

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