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ERX2728434: HiSeq X Ten paired end sequencing; Eastern brown snake whole genome sequencing - Illumina sequencing
1 ILLUMINA (HiSeq X Ten) run: 411.1M spots, 121.9G bases, 55.3Gb downloads

Submitted by: UNIVERSITY OF NEW SOUTH WALES
Study: De novo whole genome sequencing of the eastern brown snake, Pseudonaja textilis.
show Abstracthide Abstract
The eastern brown snake, Pseudonaja textilis, has a potent venom and is one of the most deadly snakes in Australia. We have performed whole genome sequencing and de novo assembly of the eastern brown snake, using 10x Chromium linked reads. Supernova v2 assembly of the data generated a 1.59 Gb draft genome with a maximum scaffold size of 55.1 Mb, primary scaffold N50 of 14.7 Mb (2.47% gaps) and a primary scaffold BUSCO (v2.0.1 short) completeness estimate of 90.5% (brown snake). Pseudodiploid processing of the assembly generated non-redundant alternative scaffolds for 1.23 Gb (77.6%) of the assembly, with an N50 of 17.1 Mb (2.38% gaps).
Sample: Female eastern brown snake
SAMEA4800208 • ERS2620126 • All experiments • All runs
Library:
Name: 170814_FR07936203
Instrument: HiSeq X Ten
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: High-molecular weight DNA was extracted from the tail of an adult female eastern brown snake (Pseudonaja textilis) and used to generate a 10x Genomics Chromium paired end sequencing library. This library was sequenced on an Illumna HiSeq X Ten.
Runs: 1 run, 411.1M spots, 121.9G bases, 55.3Gb
Run# of Spots# of BasesSizePublished
ERR2714265411,065,936121.9G55.3Gb2018-07-29

ID:
6067519

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