U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERX2690664: MinION sequencing
1 OXFORD_NANOPORE (MinION) run: 141,914 spots, 1.2G bases, 1.3Gb downloads

Design: metagenome hybrid assembly
Submitted by: FRAUNHOFER IGB
Study: Enhanced annotation of microbiomes and their genetic repertoires implicated in anaerobic digestions for the generation of biogas
show Abstracthide Abstract
A Biogas Metagenomics Hybrid Assembly (BioMETHA) database,specific for the microbiome of biogas plants, was generated using a dedicatedassembly strategy for the metagenomic datasets. Long reads from nanoporesequencing (MinION) were combined with short, more accurate secondgeneration sequencing reads (Illumina HiSeq). Binning following assembly resulted in 231 genomic bins with an average completeness of 47%. Functional annotation identified roughly 207k genes, specific for biogas plant microbiomes. BioMETHA allows mapping of up to 73% of DNA samples derived from various biogas plants.
Sample: Biogas plant 2 metagenomic MinION ONT sample
SAMEA4724676 • ERS2544813 • All experiments • All runs
Organism: metagenome
Library:
Name: Bgp2 ONT
Instrument: MinION
Strategy: WGS
Source: METAGENOMIC
Selection: unspecified
Layout: SINGLE
Construction protocol: SQK-LSK208
Runs: 1 run, 141,914 spots, 1.2G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
ERR2675610141,9141.2G1.3Gb2018-12-02

ID:
6859255

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...