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ERX1826145: Illumina HiSeq 2000 sequencing; qiita_ptid_90:846.Fagna24102011Soil12C2
1 ILLUMINA (Illumina HiSeq 2000) run: 255,404 spots, 25.5M bases, 19.6Mb downloads

Design: The field study was conducted on 24 experimental plots on a loam soil of Fagna, Tuscany (Italy), where soil samples were collected at four different layers of 10 cm each, up to a total depth of 40 cm (0-10, 10-20, 20-30 and 30-40 cm in triplicate) and of 20 cm (0-10 and 10-20 cm) from continuous and rotating maize fields respectively, in order to measure the effect of the different tillage practices on soil organic matter, microbial diversity and microbial activity.
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: Influence of tillage practices on soil microbial diversity and activity in a long-term corn experimental field under continuous maize production
show Abstracthide Abstract
It is well known that an intensive conventional farming and continuous use of land resources can lead to a decrease of soil sustainability. The aim of this study was to compare the impact of four different tillage practices (minimum tillage MT, shallow ploughing SP, ripper subsoiling RS and conventional tillage DP) on soil profile under both continuous and rotating (wheat, bean, maize) maize production since 1970. The field study was conducted on 24 experimental plots on a loam soil of Fagna, Tuscany (Italy), where soil samples were collected at four different layers of 10 cm each, up to a total depth of 40 cm (0-10, 10-20, 20-30 and 30-40 cm in triplicate) and of 20 cm (0-10 and 10-20 cm) from continuous and rotating maize fields respectively, in order to measure the effect of the different tillage practices on soil organic matter, microbial diversity and microbial activity.
Sample: 846.Fagna24102011Soil12C2; Influence of tillage practices on soil microbial diversity and activity in a long-term corn experimental field under continuous maize production
SAMEA27246418 • ERS1474443 • All experiments • All runs
Organism: soil metagenome
Library:
Name: 846.Fagna24102011Soil12C2
Instrument: Illumina HiSeq 2000
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: EMP V4 515f, 806rbc protocol
Experiment attributes: (show all 16 attributes...) (hide...)
barcode: GAATACCAAGTC
center_name: CRA-ABP
center_project_name: Mocali_Tillage_impact_on_soil_quality
emp_status: EMP
illumina_technology: HiSeq
linker: GT
pcr_primers: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT
primer: GTGTGCCAGCMGCCGCGGTAA
run_center: CCME
run_date: 12/17/12
run_prefix: EMP_Misc_16v4EMP_NoIndex_L005_sequences
sample_center: CRA-ABP
sequencing_meth: sequencing by synthesis
study_center: CCME
target_gene: 16S rRNA
target_subfragment: V4
Runs: 1 run, 255,404 spots, 25.5M bases, 19.6Mb
Run# of Spots# of BasesSizePublished
ERR1759825255,40425.5M19.6Mb2016-12-23

ID:
3547948

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