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ERX1821175: Illumina HiSeq 2000 sequencing; qiita_ptid_74:638.RMK.ENR.32.1
1 ILLUMINA (Illumina HiSeq 2000) run: 562,355 spots, 55.8M bases, 39.8Mb downloads

Design: Targeted gene survey for 16S (bacteria and archaea) of samples from McMurdo Dry Lakes, Antarctica
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: Protist diversity in a permanently ice-covered Antarctic Lake during the polar night transition
show Abstracthide Abstract
The McMurdo Dry Valleys of Antarctica harbor numerous permanently ice-covered lakes, which provide a year-round oasis for microbial life. Microbial eukaryotes in these lakes occupy a variety of trophic levels within the simple aquatic food web ranging from primary producers to tertiary predators. Here, we report the first molecular study to describe the vertical distribution of the eukaryotic community residing in the photic zone of the east lobe (ELB) and west lobe (WLB) of the chemically stratified Lake Bonney. The 18S ribosomal RNA (rRNA) libraries revealed vertically stratified populations dominated by photosynthetic protists, with a cryptophyte dominating shallow populations (ELB-6m; WLB-10m), a haptophyte occupying mid-depths (both lobes 13m) and chlorophytes residing in the deepest layers (ELB-18 and 20m; WLB-15 and 20m) of the photic zone. A previously undetected stramenopile occurred throughout the water column of both lobes. Temporal variation in the eukaryotic populations was examined during the transition from Antarctic summer (24-h sunlight) to polar night (complete dark). Protist diversity was similar between the two lobes of Lake Bonney due to exchange between the photic zones of the two basins via a narrow bedrock sill. However, vertical and temporal variation in protist distribution occurred, indicating the influence of the unique water chemistry on the biology of the two dry valley watersheds.
Sample: 638.RMK.ENR.32.1; Protist diversity in a permanently ice-covered Antarctic Lake during the polar night transition
SAMEA24967918 • ERS1471405 • All experiments • All runs
Library:
Name: 638.RMK.ENR.32.1
Instrument: Illumina HiSeq 2000
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: EMP V4 515f,806rbc protocol
Experiment attributes: (show all 17 attributes...) (hide...)
barcode: CTTCCAACTCAT
center_name: ANL
center_project_name: Protist diversity in a permanently ice-covered Ant (show full text...)(hide...)
Protist diversity in a permanently ice-covered Antarctic Lake during the polar night transition
emp_status: EMP
illumina_technology: HiSeq
linker: GT
pcr_primers: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT
primer: GTGTGCCAGCMGCCGCGGTAA
run_center: CCME
run_date: 01/30/2012
run_prefix: s_2_1_sequences
samp_size: .1,g
sample_center: Miami U, OH
sequencing_meth: sequencing by synthesis
study_center: CCME
target_gene: 16S rRNA
target_subfragment: V4
Runs: 1 run, 562,355 spots, 55.8M bases, 39.8Mb
Run# of Spots# of BasesSizePublished
ERR1753808562,35555.8M39.8Mb2016-12-23

ID:
3546843

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