Illumina HiSeq 2000 sequencing; qiita_ptid_75:659.NZFACE.R1.Ryegrass.... - SRA

ERX1708464: Illumina HiSeq 2000 sequencing; qiita_ptid_75:659.NZFACE.R1.Ryegrass.26.4
1 ILLUMINA (Illumina HiSeq 2000) run: 256,156 spots, 24.9M bases, 22.9Mb downloads

Design: soil sample from Ring 1 of NZ FACE expt . In ring 1 pasture atmosphere is enriched with 475 ppm CO2 throughout photoperiod and throughout photoperiod since 1997. No warming

Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)

Study: New Zealand Free Air Carbon dioxide Enrichment soil samples

PRJEB15435 • ERP017166 • All experiments • All runs

show Abstracthide Abstract

Rhizosphere soil samples from Rings 1-6 of NZ FACE (New Zealand Free Air Carbon Dioxide Enrichment) experiment. Each ring pasture has an atmosphere that is either enriched with 475 ppm CO2 or ambient atmospheric CO2 throughout the photoperiod and throughout the photoperiod since 1997. Each sample also comes from either an area exposed to warming treatment since 2009 or an area with no warming treatment.

Sample: New Zealand Free Air Carbon dioxide Enrichment, AgResearch; 659.NZFACE.R1.Ryegrass.26.4

SAMEA4443711 • ERS1355160 • All experiments • All runs

Organism: soil metagenome

Library:

Name: 659.NZFACE.R1.Ryegrass.26.4

Instrument: Illumina HiSeq 2000

Strategy: OTHER

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Construction protocol: EMP V4 515f,806rbc protocol

Experiment attributes: (show all 17 attributes...) (hide...)

barcode: AACTCCTGTGGA

center_name: ANL

center_project_name: New Zealand Free Air Carbon dioxide Enrichment, Ag (show full text...)(hide...)

New Zealand Free Air Carbon dioxide Enrichment, AgResearch

emp_status: EMP

illumina_technology: HiSeq

linker: GT

pcr_primers: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT

primer: GTGTGCCAGCMGCCGCGGTAA

run_center: CCME

run_date: 2/15/12

run_prefix: s_3_1_sequences

samp_size: .1,g

sample_center: LBNL

sequencing_meth: sequencing by synthesis

study_center: CCME

target_gene: 16S rRNA

target_subfragment: V4

Runs: 1 run, 256,156 spots, 24.9M bases, 22.9Mb

Run	# of Spots	# of Bases	Size	Published
ERR1638143	256,156	24.9M	22.9Mb	2016-09-30

ID:: 3221932

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