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ERX1628765: Illumina HiSeq 2000 sequencing; qiita_ptid_11:1034.CHB3
1 ILLUMINA (Illumina HiSeq 2000) run: 2 spots, 180 bases, 30,058b downloads

Design: European and Russian collaboration to investigate the organic estimates of carbon in the Eurasian tundra
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: Distinct microbial communities associated with buried soils in the Siberian tundra.
show Abstracthide Abstract
Around 1700 Gt carbon are stored in the Northern latitude permafrost regions (Schuur et al, BioScience 2008). This is more than double the size of the atmospheric carbon pool but the estimates are still quite uncertain and might be even higher. It is however estimated that 25 percent of this large carbon pool in Arctic soils will be lost by the end of the 21st century and will be released to the atmosphere as CO2 (Gruber et al., 2004). The subduction of organic-rich material from the surface to deeper layers caused by repeated freezing and thawing of the active layer during Arctic summer is assumed to be a major mechanism of carbon storage in the Arctic. These cryoturbations are spatially widely distributed and store high amounts of soil organic carbon (SOC). Decomposition of recent cryoturbated carbon is strongly retarded thereby essentially taking out this fraction of SOC from the current carbon cycle. Todays primary concern and research focus is the vulnerability of cryoturbated SOC due to global warming which is predicted to lead to intensified decomposition and elevated greenhouse gas emissions. Here we present a study that aims to provide a comprehensive picture of the microbial community structure of permafrost-affected and cryoturbated soils of different Northern latitude permafrost regions in Siberia and Greenland. For this purpose, soil samples were collected in northeast Siberia in a transect along the upper Kolyma river, and in the Zackenberg region, Greenland. The sampling scheme covered several bioclimatic subzones and vegetation types. We are currently analysing data retrieved from SSU amplicon sequencing, the quantification of several functional groups involved in carbon cycling and physico-chemical analyses in order to predict potential microbial regulators in SOC storage. This study is part of the multinational CryoCARB project (for further information, see: www.cryocarb.net).
Sample: CryoCARB Permafrost soil microbiome; 1034.CHB3
SAMEA4368634 • ERS1280083 • All experiments • All runs
Organism: soil metagenome
Library:
Name: 1034.CHB3
Instrument: Illumina HiSeq 2000
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: EMP V4 515f,806rbc protocol
Experiment attributes: (show all 17 attributes...) (hide...)
barcode: ATGTTTAGACGG
center_name: Institutt for biologi
center_project_name: CryoCARB2
emp_status: EMP
illumina_technology: HiSeq
linker: GT
pcr_primers: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT
primer: GTGTGCCAGCMGCCGCGGTAA
run_center: CCME
run_date: 2/15/12
run_prefix: s_4_1_sequences
samp_size: .1,g
sample_center: ANL
sequencing_meth: sequencing by synthesis
study_center: CCME
target_gene: 16S rRNA
target_subfragment: V4
Runs: 1 run, 2 spots, 180 bases, 30,058b
Run# of Spots# of BasesSizePublished
ERR1558009218030,058b2016-08-05

ID:
2884895

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