Illumina HiSeq 2000 sequencing; qiita_ptid_8:1030.TVF.Control.Loc5.D0... - SRA

ERX1615188: Illumina HiSeq 2000 sequencing; qiita_ptid_8:1030.TVF.Control.Loc5.D0.Rep3
1 ILLUMINA (Illumina HiSeq 2000) run: 204,265 spots, 19.8M bases, 18.4Mb downloads

Design: EMP project

Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)

Study: Spatial variation in arctic soil microbial communities in fire impacted permafrost ecosystems

PRJEB14866 • ERP016543 • All experiments • All runs

Sample: 1030.TVF.Control.Loc5.D0.Rep3; Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest

SAMEA4350583 • ERS1262032 • All experiments • All runs

Organism: soil metagenome

Library:

Name: 1030.TVF.Control.Loc5.D0.Rep3

Instrument: Illumina HiSeq 2000

Strategy: OTHER

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Construction protocol: EMP V4 515f,806rbc protocol

Experiment attributes: (show all 17 attributes...) (hide...)

barcode: TAGGCATGCTTG

center_name: LBNL

center_project_name: Alaskan Fire Chronosequence - Tanana Valley Fire

emp_status: EMP

illumina_technology: HiSeq

linker: GT

pcr_primers: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT

primer: GTGTGCCAGCMGCCGCGGTAA

run_center: CCME

run_date: 2/15/12

run_prefix: s_4_1_sequences

samp_size: .1,g

sample_center: LBNL

sequencing_meth: Sequencing by synthesis

study_center: CCME

target_gene: 16S rRNA

target_subfragment: V4

Runs: 1 run, 204,265 spots, 19.8M bases, 18.4Mb

Run	# of Spots	# of Bases	Size	Published
ERR1544423	204,265	19.8M	18.4Mb	2016-07-21

ID:: 2832307

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity