Illumina HiSeq 2000 sequencing; qiita_ptid_8:1030.TVF.2010.Loc2.D0.Re... - SRA

ERX1615107: Illumina HiSeq 2000 sequencing; qiita_ptid_8:1030.TVF.2010.Loc2.D0.Rep2
1 ILLUMINA (Illumina HiSeq 2000) run: 148,324 spots, 14.4M bases, 12.8Mb downloads

Design: EMP project

Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)

Study: Spatial variation in arctic soil microbial communities in fire impacted permafrost ecosystems

PRJEB14866 • ERP016543 • All experiments • All runs

Sample: Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest; 1030.TVF.2010.Loc2.D0.Rep2

SAMEA4350502 • ERS1261951 • All experiments • All runs

Organism: soil metagenome

Library:

Name: 1030.TVF.2010.Loc2.D0.Rep2

Instrument: Illumina HiSeq 2000

Strategy: OTHER

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Construction protocol: EMP V4 515f,806rbc protocol

Experiment attributes: (show all 17 attributes...) (hide...)

barcode: GGACTTCCAGCT

center_name: LBNL

center_project_name: Alaskan Fire Chronosequence - Tanana Valley Fire

emp_status: EMP

illumina_technology: HiSeq

linker: GT

pcr_primers: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT

primer: GTGTGCCAGCMGCCGCGGTAA

run_center: CCME

run_date: 2/15/12

run_prefix: s_4_1_sequences

samp_size: .1,g

sample_center: LBNL

sequencing_meth: Sequencing by synthesis

study_center: CCME

target_gene: 16S rRNA

target_subfragment: V4

Runs: 1 run, 148,324 spots, 14.4M bases, 12.8Mb

Run	# of Spots	# of Bases	Size	Published
ERR1544342	148,324	14.4M	12.8Mb	2016-07-21

ID:: 2832197

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Sequence Read Archive

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