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ERX032016: Whole Genome Sequencing of Streptococcus agalactiae
1 ILLUMINA (Illumina HiSeq 2000) run: 3.4M spots, 512.3M bases, 214.2Mb downloads

Design: Illumina sequencing of library 3481445, constructed from sample accession ERS046905 for study accession ERP000746. This is part of an Illumina multiplexed sequencing run (6753_5). This submission includes reads tagged with the sequence ATCACGTT.
Submitted by: The Wellcome Trust Sanger Institute (SC)
Study: Genome diversity of spatially distinct Streptococcus agalactiae
show Abstracthide Abstract
"Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline." Pubmed ID: 25088811. Streptococcus agalactiae (Group B Streptococcus, GBS) is a commensal of the digestive and genitourinary tracts of humans that emerged as the leading cause of bacterial neonatal infections in Europe and North America during the 1960s. Due to the lack of epidemiological and genomic data, the reasons for this emergence are unknown. Here we show by comparative genome analysis and phylogenetic reconstruction of 229 isolates that the rise of human GBS infections corresponds to the selection and worldwide dissemination of only a few clones. The parallel expansion of the clones is preceded by the insertion of integrative and conjugative elements conferring tetracycline resistance (TcR). Thus, we propose that the use of tetracycline from 1948 onwards led in humans to the complete replacement of a diverse GBS population by only few TcR clones particularly well adapted to their host, causing the observed emergence of GBS diseases in neonates.
Sample: Streptococcus agalactiae
SAMEA1031456 • ERS046905 • All experiments • All runs
Library:
Name: 3481445
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Standard
Spot descriptor:
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Runs: 1 run, 3.4M spots, 512.3M bases, 214.2Mb
Run# of Spots# of BasesSizePublished
ERR0549703,415,474512.3M214.2Mb2012-04-15

ID:
162698

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