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DRX100150: NextSeq 500 paired end sequencing of SAMD00097512
1 ILLUMINA (NextSeq 500) run: 998,392 spots, 278.2M bases, 104Mb downloads

Submitted by: National Institute of Infectious Diseases - Japan (NIID)
Study: Whole genome sequencing of Salmonella enterica serovar Typhimurium and its monophasic variant isolated from food animals in Japan
show Abstracthide Abstract
Salmonella enterica serovar Typhimurium (Salmonella Typhimurium) and the monophasic variant (Salmonella 4,[5],12:i:-) are the major cause of gastroenteritis for both humans and animals. Pulsed-field gel electrophoresis and multilocus variable-number tandem-repeat analysis have been used widely as subtyping methods of this pathogens in the molecular epidemiological analyses, however the results do not reflect the phylogenetic information precisely. In this study, we performed phylogenetic analysis of these serovars using whole-genome sequencing data and identified nine clades to be discriminated each other as genotypes.
Sample: Salmonella enterica 4,[5],12:i:- str. L-3835, Phage type: DT193, ST34
SAMD00097512 • DRS056547 • All experiments • All runs
Name: str_L-3835_S1-PFGE-fragment_chromosome
Instrument: NextSeq 500
Strategy: WGS
Selection: RANDOM
Layout: PAIRED
Construction protocol:
Spot descriptor:
forward73  reverse

Runs: 1 run, 998,392 spots, 278.2M bases, 104Mb
Run# of Spots# of BasesSizePublished


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