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SRX230121: NIMH_SchizophreniaSwedish_Sklar Illumina random exon sequencing of genomic DNA paired-end library 'Pond-133245' containing sample 00356349 from participant PT-BQJJ
1 ILLUMINA (Illumina HiSeq 2000) run: 38.3M spots, 5.8G bases, 3Gb downloads

SRX230124SRX230123SRX230122SRX230120
UUID: 84045408-ace9-403c-bf0e-05ad26745598
Design: Whole exome library prep method
Submitted by: Broad Institute (BI)
Study: Swedish Schizophrenia Population-Based Case-control Exome Sequencing
show Abstracthide Abstract
Current findings of the genetic risk of schizophrenia and bipolar disorder emerging from genome wide association studies (GWAS) support a highly polygenic model displaying the full spectrum of causal alleles that includes the extremes of rare, penetrant alleles as well as common alleles of small effect. Lower frequency polymorphism, rare variants and private mutations have eluded measurement by GWAS studies and thus association with disease. In order to create a comprehensive catalogue of low frequency or rare coding variation in individuals with psychiatric disease and to build a foundation for future genetic studies of schizophrenia and bipolar disorder, we have obtained whole exome DNA sequence from a population-based schizophrenia and bipolar disorder Swedish case-control cohort.
Sample: Non-tumor DNA sample from BLOOD of a human male participant in the dbGaP study "Sweden-Schizophrenia Population-Based Case-Control Exome Sequencing"
SAMN01840998 • SRS392329 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Pond-133245
Instrument: Illumina HiSeq 2000
Strategy: WXS
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Spot descriptor:
forward77  reverse

Experiment attributes: (show all 5 attributes...) (hide...)
lsid: broadinstitute.org:bsp.prod.sample:2J8MZ
project: C830
sample_barcode: 161458.0
target_set: whole_exome_agilent_1.1_refseq_plus_3_boosters
work_request: 28490
Pipeline: show...hide...
NameStepProgramVersionNotes
base caller2012-02-11 11:01:57.0GAPipelineRTA1.12.4.2Sequencer Application 1.4.8
The SRA run(s) below contain human sequence (more...)(less...)

These data are available through the dbGaP authorized access system. Request access to:

  • Study:  phs000473
  • Consent Group: GRU

Runs: 1 run, 38.3M spots, 5.8G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR75392538,256,2055.8G3Gb2013-02-22

ID:
318943

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