My Bibliography

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Eliad B, Schneider N, Zgayer OB, Amichan Y, Glaser F, Erdmann EA, Rajendren S, Hundley HA, Lamm AT. ADBP-1 regulates ADR-2 nuclear localization to control editing substrate selection. bioRxiv. 2024 Jun 9;. doi: 10.1101/2023.05.14.540679. PubMed PMID: 38895382; PubMed Central PMCID: PMC11185548.

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Erdmann EA, Forbes M, Becker M, Perez S, Hundley HA. ADR-2 regulates fertility and oocyte fate in C. elegans. bioRxiv. 2024 May 24;. doi: 10.1101/2023.11.01.565157. PubMed PMID: 37961348; PubMed Central PMCID: PMC10635048.

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Dhakal A, Salim C, Skelly M, Amichan Y, Lamm AT, Hundley HA. ADARs regulate cuticle collagen expression and promote survival to pathogen infection. BMC Biol. 2024 Feb 16;22(1):37. doi: 10.1186/s12915-024-01840-1. PubMed PMID: 38360623; PubMed Central PMCID: PMC10870475.

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Mahapatra A, Dhakal A, Noguchi A, Vadlamani P, Hundley HA. ADAR-mediated regulation of PQM-1 expression in neurons impacts gene expression throughout C. elegans and regulates survival from hypoxia. PLoS Biol. 2023 Sep;21(9):e3002150. doi: 10.1371/journal.pbio.3002150. eCollection 2023 Sep. PubMed PMID: 37747897; PubMed Central PMCID: PMC10553819.

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Mahapatra A, Dhakal A, Noguchi A, Vadlamani P, Hundley HA. ADARs employ a neural-specific mechanism to regulate PQM-1 expression and survival from hypoxia. bioRxiv. 2023 May 5;. doi: 10.1101/2023.05.05.539519. PubMed PMID: 37205482; PubMed Central PMCID: PMC10187282.

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Saleh MM, Hundley HA, Zentner GE. Involvement of the SAGA and TFIID coactivator complexes in transcriptional dysregulation caused by the separation of core and tail Mediator modules. G3 (Bethesda). 2022 Dec 1;12(12). doi: 10.1093/g3journal/jkac290. PubMed PMID: 36331351; PubMed Central PMCID: PMC9713439.

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Mukherjee S, Calvi BR, Hundley HA, Sokol NS. MicroRNA mediated regulation of the onset of enteroblast differentiation in the Drosophila adult intestine. Cell Rep. 2022 Oct 18;41(3):111495. doi: 10.1016/j.celrep.2022.111495. PubMed PMID: 36261011; PubMed Central PMCID: PMC9711887.

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Ariyapala IS, Buddika K, Hundley HA, Calvi BR, Sokol NS. The RNA-binding protein Swm is critical for Drosophila melanogaster intestinal progenitor cell maintenance. Genetics. 2022 Sep 30;222(2). doi: 10.1093/genetics/iyac099. PubMed PMID: 35762963; PubMed Central PMCID: PMC9526066.

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Raghava Kurup R, Oakes EK, Manning AC, Mukherjee P, Vadlamani P, Hundley HA. RNA binding by ADAR3 inhibits adenosine-to-inosine editing and promotes expression of immune response protein MAVS. J Biol Chem. 2022 Sep;298(9):102267. doi: 10.1016/j.jbc.2022.102267. Epub 2022 Jul 15. PubMed PMID: 35850307; PubMed Central PMCID: PMC9418441.

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Raghava Kurup R, Oakes EK, Vadlamani P, Nwosu O, Danthi P, Hundley HA. ADAR3 activates NF-κB signaling and promotes glioblastoma cell resistance to temozolomide. Sci Rep. 2022 Aug 3;12(1):13362. doi: 10.1038/s41598-022-17559-4. PubMed PMID: 35922651; PubMed Central PMCID: PMC9349284.

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Erdmann EA, Abraham O, Hundley HA. Caenorhabditis elegans expressing a Vitellogenin::GFP fusion protein show reduced embryo content and brood size. MicroPubl Biol. 2022;2022. doi: 10.17912/micropub.biology.000532. eCollection 2022. PubMed PMID: 35252801; PubMed Central PMCID: PMC8889445.

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Mukherjee P, Raghava Kurup R, Hundley HA. RNA immunoprecipitation to identify in vivo targets of RNA editing and modifying enzymes. Methods Enzymol. 2021;658:137-160. doi: 10.1016/bs.mie.2021.06.005. Epub 2021 Jul 14. PubMed PMID: 34517945; PubMed Central PMCID: PMC8495627.

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Erdmann EA, Mahapatra A, Mukherjee P, Yang B, Hundley HA. To protect and modify double-stranded RNA - the critical roles of ADARs in development, immunity and oncogenesis. Crit Rev Biochem Mol Biol. 2021 Feb;56(1):54-87. doi: 10.1080/10409238.2020.1856768. Epub 2020 Dec 27. Review. PubMed PMID: 33356612; PubMed Central PMCID: PMC8019592.

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Rajendren S, Dhakal A, Vadlamani P, Townsend J, Deffit SN, Hundley HA. Profiling neural editomes reveals a molecular mechanism to regulate RNA editing during development. Genome Res. 2021 Jan;31(1):27-39. doi: 10.1101/gr.267575.120. Epub 2020 Dec 18. PubMed PMID: 33355311; PubMed Central PMCID: PMC7849389.

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Arribere JA, Kuroyanagi H, Hundley HA. mRNA Editing, Processing and Quality Control in Caenorhabditis elegans. Genetics. 2020 Jul;215(3):531-568. doi: 10.1534/genetics.119.301807. Review. PubMed PMID: 32632025; PubMed Central PMCID: PMC7337075.

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Oshiro RT, Rajendren S, Hundley HA, Kearns DB. Robust Stoichiometry of FliW-CsrA Governs Flagellin Homeostasis and Cytoplasmic Organization in Bacillus subtilis. mBio. 2019 May 21;10(3). doi: 10.1128/mBio.00533-19. PubMed PMID: 31113895; PubMed Central PMCID: PMC6529632.

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Ganem NS, Ben-Asher N, Manning AC, Deffit SN, Washburn MC, Wheeler EC, Yeo GW, Zgayer OB, Mantsur E, Hundley HA, Lamm AT. Disruption in A-to-I Editing Levels Affects C. elegans Development More Than a Complete Lack of Editing. Cell Rep. 2019 Apr 23;27(4):1244-1253.e4. doi: 10.1016/j.celrep.2019.03.095. PubMed PMID: 31018137; PubMed Central PMCID: PMC8139731.

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Rajendren S, Manning AC, Al-Awadi H, Yamada K, Takagi Y, Hundley HA. A protein-protein interaction underlies the molecular basis for substrate recognition by an adenosine-to-inosine RNA-editing enzyme. Nucleic Acids Res. 2018 Oct 12;46(18):9647-9659. doi: 10.1093/nar/gky800. PubMed PMID: 30202880; PubMed Central PMCID: PMC6182170.

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Deffit SN, Yee BA, Manning AC, Rajendren S, Vadlamani P, Wheeler EC, Domissy A, Washburn MC, Yeo GW, Hundley HA. The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis. Elife. 2017 Sep 19;6. doi: 10.7554/eLife.28625. PubMed PMID: 28925356; PubMed Central PMCID: PMC5644944.

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Oakes E, Anderson A, Cohen-Gadol A, Hundley HA. Adenosine Deaminase That Acts on RNA 3 (ADAR3) Binding to Glutamate Receptor Subunit B Pre-mRNA Inhibits RNA Editing in Glioblastoma. J Biol Chem. 2017 Mar 10;292(10):4326-4335. doi: 10.1074/jbc.M117.779868. Epub 2017 Feb 6. PubMed PMID: 28167531; PubMed Central PMCID: PMC5354488.

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Oakes E, Vadlamani P, Hundley HA. Methods for the Detection of Adenosine-to-Inosine Editing Events in Cellular RNA. Methods Mol Biol. 2017;1648:103-127. doi: 10.1007/978-1-4939-7204-3_9. PubMed PMID: 28766293.

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Washburn MC, Hundley HA. Trans and cis factors affecting A-to-I RNA editing efficiency of a noncoding editing target in C. elegans. RNA. 2016 May;22(5):722-8. doi: 10.1261/rna.055079.115. Epub 2016 Feb 25. PubMed PMID: 26917557; PubMed Central PMCID: PMC4836646.

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Deffit SN, Hundley HA. To edit or not to edit: regulation of ADAR editing specificity and efficiency. Wiley Interdiscip Rev RNA. 2016 Jan-Feb;7(1):113-27. doi: 10.1002/wrna.1319. Epub 2015 Nov 26. Review. PubMed PMID: 26612708.

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Washburn MC, Hundley HA. Controlling the Editor: The Many Roles of RNA-Binding Proteins in Regulating A-to-I RNA Editing. Adv Exp Med Biol. 2016;907:189-213. doi: 10.1007/978-3-319-29073-7_8. PubMed PMID: 27256387.

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Wheeler EC, Washburn MC, Major F, Rusch DB, Hundley HA. Noncoding regions of C. elegans mRNA undergo selective adenosine to inosine deamination and contain a small number of editing sites per transcript. RNA Biol. 2015;12(2):162-74. doi: 10.1080/15476286.2015.1017220. PubMed PMID: 25826568; PubMed Central PMCID: PMC4615841.

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Washburn MC, Kakaradov B, Sundararaman B, Wheeler E, Hoon S, Yeo GW, Hundley HA. The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome. Cell Rep. 2014 Feb 27;6(4):599-607. doi: 10.1016/j.celrep.2014.01.011. Epub 2014 Feb 6. PubMed PMID: 24508457; PubMed Central PMCID: PMC3959997.

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Hundley HA. Regulation of gene expression through inosine-containing UTRs. In: Maas S, editor. RNA Editing: Current Research and Future Trends Norfolk, UK: Caister Academic Press; 2013. Chapter 9; p.193-205. 231p.

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Bass B, Hundley H, Li JB, Peng Z, Pickrell J, Xiao XG, Yang L. The difficult calls in RNA editing. Interviewed by H Craig Mak. Nat Biotechnol. 2012 Dec;30(12):1207-9. doi: 10.1038/nbt.2452. PubMed PMID: 23222792.

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Capshew CR, Dusenbury KL, Hundley HA. Inverted Alu dsRNA structures do not affect localization but can alter translation efficiency of human mRNAs independent of RNA editing. Nucleic Acids Res. 2012 Sep 1;40(17):8637-45. doi: 10.1093/nar/gks590. Epub 2012 Jun 25. PubMed PMID: 22735697; PubMed Central PMCID: PMC3458544.

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Hundley HA, Bass BL. ADAR editing in double-stranded UTRs and other noncoding RNA sequences. Trends Biochem Sci. 2010 Jul;35(7):377-83. doi: 10.1016/j.tibs.2010.02.008. Epub 2010 Apr 8. Review. PubMed PMID: 20382028; PubMed Central PMCID: PMC2897959.

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Hundley HA, Krauchuk AA, Bass BL. C. elegans and H. sapiens mRNAs with edited 3' UTRs are present on polysomes. RNA. 2008 Oct;14(10):2050-60. doi: 10.1261/rna.1165008. Epub 2008 Aug 21. PubMed PMID: 18719245; PubMed Central PMCID: PMC2553745.

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Bass BL, Hellwig S, Hundley HA. A nuclear RNA is cut out for translation. Cell. 2005 Oct 21;123(2):181-3. doi: 10.1016/j.cell.2005.10.009. PubMed PMID: 16239133; PubMed Central PMCID: PMC1823041.

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Rauch T, Hundley HA, Pfund C, Wegrzyn RD, Walter W, Kramer G, Kim SY, Craig EA, Deuerling E. Dissecting functional similarities of ribosome-associated chaperones from Saccharomyces cerevisiae and Escherichia coli. Mol Microbiol. 2005 Jul;57(2):357-65. doi: 10.1111/j.1365-2958.2005.04690.x. PubMed PMID: 15978070.

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Hundley HA, Walter W, Bairstow S, Craig EA. Human Mpp11 J protein: ribosome-tethered molecular chaperones are ubiquitous. Science. 2005 May 13;308(5724):1032-4. doi: 10.1126/science.1109247. Epub 2005 Mar 31. PubMed PMID: 15802566.

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Craig EA, Eisenman HC, Hundley HA. Ribosome-tethered molecular chaperones: the first line of defense against protein misfolding?. Curr Opin Microbiol. 2003 Apr;6(2):157-62. doi: 10.1016/s1369-5274(03)00030-4. Review. PubMed PMID: 12732306.

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Hundley H, Eisenman H, Walter W, Evans T, Hotokezaka Y, Wiedmann M, Craig E. The in vivo function of the ribosome-associated Hsp70, Ssz1, does not require its putative peptide-binding domain. Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4203-8. doi: 10.1073/pnas.062048399. PubMed PMID: 11929993; PubMed Central PMCID: PMC123626.