My Bibliography

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Tran L, Li G, Luo L, Jiang H. A Fast Solution to the Lasso Problem with Equality Constraints. Journal of Computational and Graphical Statistics. Forthcoming.

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Xu T, Chen K, Li G. Tensor regression for incomplete observations with application to longitudinal studies. The annals of applied statistics. Forthcoming.

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Bhaumik D, Salzman E, Davis E, Blostein F, Li G, Neiswanger K, Weyant RJ, Crout R, McNeil DW, Marazita ML, Foxman B. Plaque Microbiome in Caries-Active and Caries-Free Teeth by Dentition. JDR Clin Trans Res. 2024 Jan;9(1):61-71. doi: 10.1177/23800844221121260. Epub 2022 Sep 25. PubMed PMID: 36154330; PubMed Central PMCID: PMC10725180.

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Fang Z, Li G, Li W, Pu X, Xiang D. Distributed eQTL analysis with auxiliary information. J Stat Plan Inference. 2024 Jan;228:34-45. doi: 10.1016/j.jspi.2023.06.003. Epub 2023 Jun 28. PubMed PMID: 38264292; PubMed Central PMCID: PMC10805471.

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Li G, Li Y, Chen K. It's all relative: Regression analysis with compositional predictors. Biometrics. 2023 Jun;79(2):1318-1329. doi: 10.1111/biom.13703. Epub 2022 Jul 11. PubMed PMID: 35616500; PubMed Central PMCID: PMC9767704.

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Shen Y, Singh J, Sah B, Chen Z, Ha W, Henzler C, Su T, Xie L, Deng Y, Li G, Guo H, Hibshoosh H, Liu L. The Histone Demethylase HR Suppresses Breast Cancer Development through Enhanced CELF2 Tumor Suppressor Activity. Cancers (Basel). 2022 Sep 24;14(19). doi: 10.3390/cancers14194648. PubMed PMID: 36230572; PubMed Central PMCID: PMC9564370.

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Carmody LA, Kalikin LM, VanDevanter DR, Li G, Opron K, Simon RH, Caverly LJ, LiPuma JJ. Changes in airway bacterial communities occur soon after initiation of antibiotic treatment of pulmonary exacerbations in cystic fibrosis. J Cyst Fibros. 2022 Sep;21(5):766-768. doi: 10.1016/j.jcf.2022.05.011. Epub 2022 Jun 4. PubMed PMID: 35667975; PubMed Central PMCID: PMC10440828.

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Madapoosi SS, Cruickshank-Quinn C, Opron K, Erb-Downward JR, Begley LA, Li G, Barjaktarevic I, Barr RG, Comellas AP, Couper DJ, Cooper CB, Freeman CM, Han MK, Kaner RJ, Labaki W, Martinez FJ, Ortega VE, Peters SP, Paine R, Woodruff P, Curtis JL, Huffnagle GB, Stringer KA, Bowler RP, Esther CR Jr, Reisdorph N, Huang YJ. Lung Microbiota and Metabolites Collectively Associate with Clinical Outcomes in Milder Stage Chronic Obstructive Pulmonary Disease. Am J Respir Crit Care Med. 2022 Aug 15;206(4):427-439. doi: 10.1164/rccm.202110-2241OC. PubMed PMID: 35536732.

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Li Y, Li G, Chen K. Principal Amalgamation Analysis for Microbiome Data. Genes (Basel). 2022 Jun 24;13(7). doi: 10.3390/genes13071139. PubMed PMID: 35885922; PubMed Central PMCID: PMC9318429.

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Xu T, Chen K, Li G. The more data, the better? Demystifying deletion-based methods in linear regression with missing data. Stat Interface. 2022;15(4):515-526. doi: 10.4310/21-sii717. Epub 2022 Mar 4. PubMed PMID: 36540373; PubMed Central PMCID: PMC9762692.

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Matsumoto H, Larson EL, Warren SI, Hammoor BT, Bonsignore-Opp L, Troy MJ, Barrett KK, Striano BM, Li G, Terry MB, Roye BD, Lenke LG, Skaggs DL, Glotzbecker MP, Flynn JM, Roye DP, Vitale MG. A Clinical Risk Model for Surgical Site Infection Following Pediatric Spine Deformity Surgery. J Bone Joint Surg Am. 2022 Feb 16;104(4):364-375. doi: 10.2106/JBJS.21.00751. PubMed PMID: 34851324.

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Liu X, Cong X, Li G, Maas K, Chen K. Multivariate log-contrast regression with sub-compositional predictors: Testing the association between preterm infants' gut microbiome and neurobehavioral outcomes. Stat Med. 2022 Feb 10;41(3):580-594. doi: 10.1002/sim.9273. Epub 2021 Dec 12. PubMed PMID: 34897772.

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Ho P, Moran GW, Wang V, Li G, Virk RK, McKiernan JM, Anderson CB. The effect of tumor grade heterogeneity on recurrence in non-muscle invasive bladder cancer. Urol Oncol. 2022 Feb;40(2):60.e11-60.e16. doi: 10.1016/j.urolonc.2021.07.003. Epub 2021 Jul 30. PubMed PMID: 34334292.

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Gao X, Lee S, Li G, Jung S. Covariate-driven factorization by thresholding for multiblock data. Biometrics. 2021 Sep;77(3):1011-1023. doi: 10.1111/biom.13352. Epub 2020 Aug 25. PubMed PMID: 32799349.

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Wallace BK, Li G, McKiernan JM, DeCastro GJ, Anderson CB. Radical cystectomy in a cohort of octogenarians managed in the ERAS era. Urol Oncol. 2021 May;39(5):299.e1-299.e6. doi: 10.1016/j.urolonc.2020.09.009. Epub 2020 Sep 25. PubMed PMID: 32981848.

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Xu T, Demmer RT, Li G. Zero-inflated Poisson factor model with application to microbiome read counts. Biometrics. 2021 Mar;77(1):91-101. doi: 10.1111/biom.13272. Epub 2020 May 4. PubMed PMID: 32277466; PubMed Central PMCID: PMC7594114.

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Benson CR, Li G, Brandes SB. Long term outcomes of one-stage augmentation anterior urethroplasty: a systematic review and meta-analysis. Int Braz J Urol. 2021 Mar-Apr;47(2):237-250. doi: 10.1590/S1677-5538.IBJU.2020.0242. Review. PubMed PMID: 32459452; PubMed Central PMCID: PMC7857757.

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Kim M, Li G, Mohan S, Turnbull ZA, Kiran RP, Li G. Intraoperative Data Enhance the Detection of High-Risk Acute Kidney Injury Patients When Added to a Baseline Prediction Model. Anesth Analg. 2021 Feb 1;132(2):430-441. doi: 10.1213/ANE.0000000000005057. PubMed PMID: 32769380; PubMed Central PMCID: PMC7855510.

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Smigelski M, Wallace BK, Lu J, Li G, Anderson CB. Differences in Use of Aggressive Therapy for Localized Prostate Cancer in New York City. Clin Genitourin Cancer. 2021 Feb;19(1):e55-e62. doi: 10.1016/j.clgc.2020.08.005. Epub 2020 Aug 13. PubMed PMID: 32891565.

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Mendonca SJ, Jessica Pan SM, Li G, Brandes SB. Real-World Practice Patterns Favor Minimally Invasive Methods over Ureteral Reconstruction in the Initial Treatment of Severe Blunt Ureteral Trauma: A National Trauma Data Bank Analysis. J Urol. 2021 Feb;205(2):470-476. doi: 10.1097/JU.0000000000001347. Epub 2020 Sep 8. PubMed PMID: 32897815.

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Haas CR, Li G, Hyams ES, Shah O. Delayed Decompression of Obstructing Stones with Urinary Tract Infection is Associated with Increased Odds of Death. J Urol. 2020 Dec;204(6):1256-1262. doi: 10.1097/JU.0000000000001182. Epub 2020 Jun 5. PubMed PMID: 32501124.

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Kim HW, Capaccione KM, Li G, Luk L, Widemon RS, Rahman O, Beylergil V, Mitchell R, D'Souza BM, Leb JS, Dumeer S, Bentley-Hibbert S, Liu M, Jambawalikar S, Austin JHM, Salvatore M. The role of initial chest X-ray in triaging patients with suspected COVID-19 during the pandemic. Emerg Radiol. 2020 Dec;27(6):617-621. doi: 10.1007/s10140-020-01808-y. Epub 2020 Jun 22. PubMed PMID: 32572707; PubMed Central PMCID: PMC7306559.

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Li G. Generalized Co-Clustering Analysis via Regularized Alternating Least Squares. Comput Stat Data Anal. 2020 Oct;150. doi: 10.1016/j.csda.2020.106989. Epub 2020 May 4. PubMed PMID: 32546879; PubMed Central PMCID: PMC7297185.

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Alcalay RN, Wolf P, Chiang MSR, Helesicova K, Zhang XK, Merchant K, Hutten SJ, Scherzer C, Caspell-Garcia C, Blauwendraat C, Foroud T, Nudelman K, Gan-Or Z, Simuni T, Chahine LM, Levy O, Zheng D, Li G, Sardi SP. Longitudinal Measurements of Glucocerebrosidase activity in Parkinson's patients. Ann Clin Transl Neurol. 2020 Oct;7(10):1816-1830. doi: 10.1002/acn3.51164. Epub 2020 Sep 5. PubMed PMID: 32888397; PubMed Central PMCID: PMC7545591.

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Sun Z, Xu W, Cong X, Li G, Chen K. LOG-CONTRAST REGRESSION WITH FUNCTIONAL COMPOSITIONAL PREDICTORS: LINKING PRETERM INFANT'S GUT MICROBIOME TRAJECTORIES TO NEUROBEHAVIORAL OUTCOME. Ann Appl Stat. 2020 Sep;14(3):1535-1556. doi: 10.1214/20-aoas1357. Epub 2020 Sep 18. PubMed PMID: 34163544; PubMed Central PMCID: PMC8218926.

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The GTEx Consortium atlas of genetic regulatory effects across human tissues. Science. 2020 Sep 11;369(6509):1318-1330. doi: 10.1126/science.aaz1776. PubMed PMID: 32913098; PubMed Central PMCID: PMC7737656.

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Benson CR, Thompson S, Li G, Asafu-Adjei D, Brandes SB. Bladder and ureteral injuries during benign hysterectomy: an observational cohort analysis in New York State. World J Urol. 2020 Aug;38(8):2049-2054. doi: 10.1007/s00345-018-2541-y. Epub 2018 Nov 7. PubMed PMID: 30406476.

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Zhu H, Li G, Lock EF. Generalized integrative principal component analysis for multi-type data with block-wise missing structure. Biostatistics. 2020 Apr 1;21(2):302-318. doi: 10.1093/biostatistics/kxy052. PubMed PMID: 30247540; PubMed Central PMCID: PMC7868054.

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Caputo JM, Moran G, Muller B, Keller AT, Li G, Anderson CB. The Management of Newly-Diagnosed Non-muscle Invasive Bladder Cancer in Veterans Integrated Services Network 02 of the Veterans Health Administration. Mil Med. 2020 Feb 12;185(1-2):276-281. doi: 10.1093/milmed/usz166. PubMed PMID: 31294791.

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Anderson CB, Lipsky M, Nandula SV, Freeman CE, Matthews T, Walsh CE, Li G, Szabolcs M, Mansukhani MM, McKiernan JM, Murty VV. Cytogenetic analysis of 130 renal oncocytomas identify three distinct and mutually exclusive diagnostic classes of chromosome aberrations. Genes Chromosomes Cancer. 2020 Jan;59(1):6-12. doi: 10.1002/gcc.22766. Epub 2019 Jun 4. PubMed PMID: 31112346.

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Asafu-Adjei D, Judge C, Deibert CM, Li G, Stember D, Stahl PJ. Systematic Review of the Impact of Varicocele Grade on Response to Surgical Management. J Urol. 2020 Jan;203(1):48-56. doi: 10.1097/JU.0000000000000311. Epub 2019 May 1. PubMed PMID: 31042452.

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Sebesta EM, March A, Sayegh C, Li G, Love M, Badalato GM, Ferdschneider M, Cooper KL. Reducing overprescribing of antibiotics for suspected urinary tract infections in a health sciences campus student health service. Neurourol Urodyn. 2020 Jan;39(1):220-224. doi: 10.1002/nau.24173. Epub 2019 Oct 2. PubMed PMID: 31578755.

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Li G. Expression Quantitative Trait Loci Analysis in Multiple Tissues. Methods Mol Biol. 2020;2082:231-237. doi: 10.1007/978-1-0716-0026-9_16. PubMed PMID: 31849019; PubMed Central PMCID: PMC9766420.

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Gaynanova I, Li G. Structural learning and integrative decomposition of multi-view data. Biometrics. 2019 Dec;75(4):1121-1132. doi: 10.1111/biom.13108. Epub 2019 Sep 15. PubMed PMID: 31254385.

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Demmer RT, Trinh P, Rosenbaum M, Li G, LeDuc C, Leibel R, González A, Knight R, Paster B, Colombo PC, Desvarieux M, Papapanou PN, Jacobs DR Jr. Subgingival Microbiota and Longitudinal Glucose Change: The Oral Infections, Glucose Intolerance and Insulin Resistance Study (ORIGINS). J Dent Res. 2019 Dec;98(13):1488-1496. doi: 10.1177/0022034519881978. Epub 2019 Oct 17. PubMed PMID: 31623509; PubMed Central PMCID: PMC6873283.

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Green NS, Munube D, Bangirana P, Buluma LR, Kebirungi B, Opoka R, Mupere E, Kasirye P, Kiguli S, Birabwa A, Kawooya MS, Lubowa SK, Sekibira R, Kayongo E, Hume H, Elkind M, Peng W, Li G, Rosano C, LaRussa P, Minja FJ, Boehme A, Idro R. Burden of neurological and neurocognitive impairment in pediatric sickle cell anemia in Uganda (BRAIN SAFE): a cross-sectional study. BMC Pediatr. 2019 Oct 25;19(1):381. doi: 10.1186/s12887-019-1758-2. PubMed PMID: 31651270; PubMed Central PMCID: PMC6814102.

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Matulay JT, Woldu SL, Lim A, Narayan VM, Li G, Kamat AM, Anderson CB. The impact of squamous histology on survival in patients with muscle-invasive bladder cancer. Urol Oncol. 2019 Jun;37(6):353.e17-353.e24. doi: 10.1016/j.urolonc.2019.01.020. Epub 2019 Jan 28. PubMed PMID: 30704959.

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Li G, Liu X, Chen K. Integrative multi-view regression: Bridging group-sparse and low-rank models. Biometrics. 2019 Jun;75(2):593-602. doi: 10.1111/biom.13006. Epub 2019 Mar 29. PubMed PMID: 30456759; PubMed Central PMCID: PMC6849205.

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Gartrell RD, Marks DK, Rizk EM, Bogardus M, Gérard CL, Barker LW, Fu Y, Esancy CL, Li G, Ji J, Rui S, Ernstoff MS, Taback B, Pabla S, Chang R, Lee SJ, Krolewski JJ, Morrison C, Horst BA, Saenger YM. Validation of Melanoma Immune Profile (MIP), a Prognostic Immune Gene Prediction Score for Stage II-III Melanoma. Clin Cancer Res. 2019 Apr 15;25(8):2494-2502. doi: 10.1158/1078-0432.CCR-18-2847. Epub 2019 Jan 15. PubMed PMID: 30647081; PubMed Central PMCID: PMC6594682.

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Gonzalez AN, Lipsky MJ, Li G, Rutman MP, Cooper KL, Weiner DM, Badalato G, Decastro GJ, Wenske S, McKiernan JM, Anderson CB. The Prevalence of Bladder Cancer During Cystoscopy for Asymptomatic Microscopic Hematuria. Urology. 2019 Apr;126:34-38. doi: 10.1016/j.urology.2019.01.011. Epub 2019 Jan 22. PubMed PMID: 30677457.

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Chua KJ, Li G, Cooper KL, Hyams ES. Urologists use fluoroquinolones more frequently in USA states with high resistance. Int J Urol. 2019 Mar;26(3):433-434. doi: 10.1111/iju.13890. Epub 2018 Dec 16. PubMed PMID: 30556207.

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Li G, Huang JZ, Shen H. Exponential Family Functional data analysis via a low-rank model. Biometrics. 2018 Dec;74(4):1301-1310. doi: 10.1111/biom.12885. Epub 2018 May 8. PubMed PMID: 29738627.

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Mazza P, Moran GW, Li G, Robins DJ, Matulay JT, Herr HW, Decastro GJ, McKiernan JM, Anderson CB. Conservative Management Following Complete Clinical Response to Neoadjuvant Chemotherapy of Muscle Invasive Bladder Cancer: Contemporary Outcomes of a Multi-Institutional Cohort Study. J Urol. 2018 Nov;200(5):1005-1013. doi: 10.1016/j.juro.2018.05.078. Epub 2018 May 19. PubMed PMID: 29787740; PubMed Central PMCID: PMC7543664.

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Anselmo W, Branchetti E, Grau JB, Li G, Ayoub S, Lai EK, Rioux N, Tovmasyan A, Fortier JH, Sacks MS, Batinic-Haberle I, Hazen SL, Levy RJ, Ferrari G. Porphyrin-Based SOD Mimic MnTnBu OE -2-PyP(5+) Inhibits Mechanisms of Aortic Valve Remodeling in Human and Murine Models of Aortic Valve Sclerosis. J Am Heart Assoc. 2018 Oct 16;7(20):e007861. doi: 10.1161/JAHA.117.007861. PubMed PMID: 30371255; PubMed Central PMCID: PMC6474974.

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Li G, Shabalin AA, Rusyn I, Wright FA, Nobel AB. An empirical Bayes approach for multiple tissue eQTL analysis. Biostatistics. 2018 Jul 1;19(3):391-406. doi: 10.1093/biostatistics/kxx048. PubMed PMID: 29029013; PubMed Central PMCID: PMC6366007.

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Doyle JB, Raghunathan RR, Cellum I, Li G, Golub JS. Longitudinal Tracking of Sound Exposure and Hearing Aid Usage through Objective Data Logs. Otolaryngol Head Neck Surg. 2018 Jul;159(1):110-116. doi: 10.1177/0194599818766056. Epub 2018 Mar 27. PubMed PMID: 29587086; PubMed Central PMCID: PMC7415337.

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Margolin EJ, Matulay JT, Li G, Meng X, Chao B, Vijay V, Silver H, Clinton TN, Krabbe LM, Woldu SL, Singla N, Bagrodia A, Margulis V, Huang WC, Bjurlin MA, Shah O, Anderson CB. Discordance between Ureteroscopic Biopsy and Final Pathology for Upper Tract Urothelial Carcinoma. J Urol. 2018 Jun;199(6):1440-1445. doi: 10.1016/j.juro.2018.02.002. Epub 2018 Feb 7. PubMed PMID: 29427584.

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Millings EJ, De Rosa MC, Fleet S, Watanabe K, Rausch R, Egli D, Li G, Leduc CA, Zhang Y, Fischer SG, Leibel RL. ILDR2 has a negligible role in hepatic steatosis. PLoS One. 2018;13(5):e0197548. doi: 10.1371/journal.pone.0197548. eCollection 2018. PubMed PMID: 29847571; PubMed Central PMCID: PMC5976177.

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Gartrell RD, Marks DK, Hart TD, Li G, Davari DR, Wu A, Blake Z, Lu Y, Askin KN, Monod A, Esancy CL, Stack EC, Jia DT, Armenta PM, Fu Y, Izaki D, Taback B, Rabadan R, Kaufman HL, Drake CG, Horst BA, Saenger YM. Quantitative Analysis of Immune Infiltrates in Primary Melanoma. Cancer Immunol Res. 2018 Apr;6(4):481-493. doi: 10.1158/2326-6066.CIR-17-0360. Epub 2018 Feb 21. PubMed PMID: 29467127; PubMed Central PMCID: PMC5882545.

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Lock EF, Li G. Supervised multiway factorization. Electron J Stat. 2018;12(1):1150-1180. doi: 10.1214/18-EJS1421. Epub 2018 Mar 27. PubMed PMID: 29675120; PubMed Central PMCID: PMC5903347.