My Bibliography

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Leonidou N, Xia Y, Friedrich L, Schütz MS, Dräger A. Exploring the metabolic profile of A. baumannii for antimicrobial development using genome-scale modeling. PLoS Pathog. 2024 Sep;20(9):e1012528. doi: 10.1371/journal.ppat.1012528. eCollection 2024 Sep. PubMed PMID: 39312576; PubMed Central PMCID: PMC11463759.

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Puniya BL, Verma M, Damiani C, Bakr S, Dräger A. Perspectives on computational modeling of biological systems and the significance of the SysMod community. Bioinform Adv. 2024;4(1):vbae090. doi: 10.1093/bioadv/vbae090. eCollection 2024. PubMed PMID: 38948011; PubMed Central PMCID: PMC11213628.

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Leonidou N, Ostyn L, Coenye T, Crabbé A, Dräger A. Genome-scale model of Rothia mucilaginosa predicts gene essentialities and reveals metabolic capabilities. Microbiol Spectr. 2024 Jun 4;12(6):e0400623. doi: 10.1128/spectrum.04006-23. Epub 2024 Apr 23. PubMed PMID: 38652457; PubMed Central PMCID: PMC11237427.

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Bäuerle F, Döbel GO, Camus L, Heilbronner S, Dräger A. Genome-scale metabolic models consistently predict in vitro characteristics of Corynebacterium striatum. Front Bioinform. 2023;3:1214074. doi: 10.3389/fbinf.2023.1214074. eCollection 2023. PubMed PMID: 37936955; PubMed Central PMCID: PMC10626998.

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Casini I, McCubbin T, Esquivel-Elizondo S, Luque GG, Evseeva D, Fink C, Beblawy S, Youngblut ND, Aristilde L, Huson DH, Dräger A, Ley RE, Marcellin E, Angenent LT, Molitor B. An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter. iScience. 2023 Oct 20;26(10):108016. doi: 10.1016/j.isci.2023.108016. eCollection 2023 Oct 20. PubMed PMID: 37854702; PubMed Central PMCID: PMC10579436.

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Kurpejović E, Wibberg D, Bastem GM, Burgardt A, Busche T, Kaya FEA, Dräger A, Wendisch VF, Akbulut BS. Can Genome Sequencing Coupled to Flux Balance Analyses Offer Precision Guidance for Industrial Strain Development? The Lessons from Carbon Trafficking in Corynebacterium glutamicum ATCC 21573. OMICS. 2023 Sep;27(9):434-443. doi: 10.1089/omi.2023.0098. PubMed PMID: 37707996.

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Leonidou N, Fritze E, Renz A, Dräger A. SBOannotator: a Python tool for the automated assignment of systems biology ontology terms. Bioinformatics. 2023 Jul 1;39(7). doi: 10.1093/bioinformatics/btad437. PubMed PMID: 37449910; PubMed Central PMCID: PMC10371491.

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Leonidou N, Renz A, Mostolizadeh R, Dräger A. New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells. PLoS Comput Biol. 2023 Mar;19(3):e1010903. doi: 10.1371/journal.pcbi.1010903. eCollection 2023 Mar. PubMed PMID: 36952396; PubMed Central PMCID: PMC10035753.

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Dahal S, Renz A, Dräger A, Yang L. Genome-scale model of Pseudomonas aeruginosa metabolism unveils virulence and drug potentiation. Commun Biol. 2023 Feb 10;6(1):165. doi: 10.1038/s42003-023-04540-8. PubMed PMID: 36765199; PubMed Central PMCID: PMC9918512.

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Glöckler M, Dräger A, Mostolizadeh R. Hierarchical modelling of microbial communities. Bioinformatics. 2023 Jan 1;39(1). doi: 10.1093/bioinformatics/btad040. PubMed PMID: 36655763; PubMed Central PMCID: PMC9887087.

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Mostolizadeh R, Glöckler M, Dräger A. Towards the human nasal microbiome: Simulating D. pigrum and S. aureus. Front Cell Infect Microbiol. 2022;12:925215. doi: 10.3389/fcimb.2022.925215. eCollection 2022. PubMed PMID: 36605126; PubMed Central PMCID: PMC9810029.

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Holzapfel C, Hoene M, Zhao X, Hu C, Weigert C, Nieß A, Xu G, Lehmann R, Dräger A, Krone M. FluxomicsExplorer: Differential visual analysis of flux sampling based on metabolomics. Computers & Graphics. 2022 August; 108:11-21. doi: 10.1016/j.cag.2022.08.008.

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Glöckler M, Dräger A, Mostolizadeh R. NCMW: A Python Package to Analyze Metabolic Interactions in the Nasal Microbiome. Front Bioinform. 2022;2:827024. doi: 10.3389/fbinf.2022.827024. eCollection 2022. PubMed PMID: 36304309; PubMed Central PMCID: PMC9580955.

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Geißert JK, Bohn E, Mostolizadeh R, Dräger A, Autenrieth IB, Beier S, Deusch O, Renz A, Eichner M, Schütz MS. A Computational Model of Bacterial Population Dynamics in Gastrointestinal Yersinia enterocolitica Infections in Mice. Biology (Basel). 2022 Feb 12;11(2). doi: 10.3390/biology11020297. PubMed PMID: 35205164; PubMed Central PMCID: PMC8869254.

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Panchiwala H, Shah S, Planatscher H, Zakharchuk M, König M, Dräger A. The systems biology simulation core library. Bioinformatics. 2022 Jan 12;38(3):864-865. doi: 10.1093/bioinformatics/btab669. PubMed PMID: 34554191; PubMed Central PMCID: PMC8756180.

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Feierabend M, Renz A, Zelle E, Nöh K, Wiechert W, Dräger A. High-Quality Genome-Scale Reconstruction of Corynebacterium glutamicum ATCC 13032. Front Microbiol. 2021;12:750206. doi: 10.3389/fmicb.2021.750206. eCollection 2021. PubMed PMID: 34867870; PubMed Central PMCID: PMC8634658.

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Dräger A, Helikar T, Barberis M, Birtwistle M, Calzone L, Chaouiya C, Hasenauer J, Karr JR, Niarakis A, Rodríguez Martínez M, Saez-Rodriguez J, Thakar J. SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems. Bioinformatics. 2021 Nov 5;37(21):3702-3706. doi: 10.1093/bioinformatics/btab229. PubMed PMID: 34179955; PubMed Central PMCID: PMC8570808.

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Yamada TG, Ii K, König M, Feierabend M, Dräger A, Funahashi A. SBMLWebApp: Web-Based Simulation, Steady-State Analysis, and Parameter Estimation of Systems Biology Models. Processes. 2021 October; 9(10):1830. doi: 10.3390/pr9101830.

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Payne DD, Renz A, Dunphy LJ, Lewis T, Dräger A, Papin JA. An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism. NPJ Syst Biol Appl. 2021 Oct 8;7(1):37. doi: 10.1038/s41540-021-00198-2. PubMed PMID: 34625561; PubMed Central PMCID: PMC8501023.

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Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, Monraz Gómez LC, Somers J, Hoch M, Kumar Gupta S, Scheel J, Borlinghaus H, Czauderna T, Schreiber F, Montagud A, Ponce de Leon M, Funahashi A, Hiki Y, Hiroi N, Yamada TG, Dräger A, Renz A, Naveez M, Bocskei Z, Messina F, Börnigen D, Fergusson L, Conti M, Rameil M, Nakonecnij V, Vanhoefer J, Schmiester L, Wang M, Ackerman EE, Shoemaker JE, Zucker J, Oxford K, Teuton J, Kocakaya E, Summak GY, Hanspers K, Kutmon M, Coort S, Eijssen L, Ehrhart F, Rex DAB, Slenter D, Martens M, Pham N, Haw R, Jassal B, Matthews L, Orlic-Milacic M, Senff Ribeiro A, Rothfels K, Shamovsky V, Stephan R, Sevilla C, Varusai T, Ravel JM, Fraser R, Ortseifen V, Marchesi S, Gawron P, Smula E, Heirendt L, Satagopam V, Wu G, Riutta A, Golebiewski M, Owen S, Goble C, Hu X, Overall RW, Maier D, Bauch A, Gyori BM, Bachman JA, Vega C, Grouès V, Vazquez M, Porras P, Licata L, Iannuccelli M, Sacco F, Nesterova A, Yuryev A, de Waard A, Turei D, Luna A, Babur O, Soliman S, Valdeolivas A, Esteban-Medina M, Peña-Chilet M, Rian K, Helikar T, Puniya BL, Modos D, Treveil A, Olbei M, De Meulder B, Ballereau S, Dugourd A, Naldi A, Noël V, Calzone L, Sander C, Demir E, Korcsmaros T, Freeman TC, Augé F, Beckmann JS, Hasenauer J, Wolkenhauer O, Wilighagen EL, Pico AR, Evelo CT, Gillespie ME, Stein LD, Hermjakob H, D'Eustachio P, Saez-Rodriguez J, Dopazo J, Valencia A, Kitano H, Barillot E, Auffray C, Balling R, Schneider R. COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Mol Syst Biol. 2021 Oct;17(10):e10387. doi: 10.15252/msb.202110387. PubMed PMID: 34664389; PubMed Central PMCID: PMC8524328.

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Renz A, Dräger A. Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus. NPJ Syst Biol Appl. 2021 Jun 29;7(1):30. doi: 10.1038/s41540-021-00188-4. Review. PubMed PMID: 34188046; PubMed Central PMCID: PMC8241996.

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Renz A, Widerspick L, Dräger A. Genome-Scale Metabolic Model of Infection with SARS-CoV-2 Mutants Confirms Guanylate Kinase as Robust Potential Antiviral Target. Genes (Basel). 2021 May 24;12(6). doi: 10.3390/genes12060796. PubMed PMID: 34073716; PubMed Central PMCID: PMC8225150.

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Renz A, Widerspick L, Dräger A. First Genome-Scale Metabolic Model of Dolosigranulum pigrum Confirms Multiple Auxotrophies. Metabolites. 2021 Apr 9;11(4). doi: 10.3390/metabo11040232. PubMed PMID: 33918864; PubMed Central PMCID: PMC8069353.

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Mienda BS, Dräger A. Genome-Scale Metabolic Modeling of Escherichia coli and Its Chassis Design for Synthetic Biology Applications. Methods Mol Biol. 2021;2189:217-229. doi: 10.1007/978-1-0716-0822-7_16. PubMed PMID: 33180304.

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Renz A, Widerspick L, Dräger A. FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2. Bioinformatics. 2020 Dec 30;36(Suppl 2):i813-i821. doi: 10.1093/bioinformatics/btaa813. PubMed PMID: 33381848; PubMed Central PMCID: PMC7773487.

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Bernardes JP, Mishra N, Tran F, Bahmer T, Best L, Blase JI, Bordoni D, Franzenburg J, Geisen U, Josephs-Spaulding J, Köhler P, Künstner A, Rosati E, Aschenbrenner AC, Bacher P, Baran N, Boysen T, Brandt B, Bruse N, Dörr J, Dräger A, Elke G, Ellinghaus D, Fischer J, Forster M, Franke A, Franzenburg S, Frey N, Friedrichs A, Fuß J, Glück A, Hamm J, Hinrichsen F, Hoeppner MP, Imm S, Junker R, Kaiser S, Kan YH, Knoll R, Lange C, Laue G, Lier C, Lindner M, Marinos G, Markewitz R, Nattermann J, Noth R, Pickkers P, Rabe KF, Renz A, Röcken C, Rupp J, Schaffarzyk A, Scheffold A, Schulte-Schrepping J, Schunk D, Skowasch D, Ulas T, Wandinger KP, Wittig M, Zimmermann J, Busch H, Hoyer BF, Kaleta C, Heyckendorf J, Kox M, Rybniker J, Schreiber S, Schultze JL, Rosenstiel P. Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19. Immunity. 2020 Dec 15;53(6):1296-1314.e9. doi: 10.1016/j.immuni.2020.11.017. Epub 2020 Nov 26. PubMed PMID: 33296687; PubMed Central PMCID: PMC7689306.

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Mostolizadeh R, Dräger A. Computational Model Informs Effective Control Interventions against Y. enterocolitica Co-Infection. Biology (Basel). 2020 Nov 30;9(12). doi: 10.3390/biology9120431. PubMed PMID: 33266094; PubMed Central PMCID: PMC7759887.

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Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M. SBML Level 3: an extensible format for the exchange and reuse of biological models. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Review. PubMed PMID: 32845085; PubMed Central PMCID: PMC8411907.

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Carey MA, Dräger A, Beber ME, Papin JA, Yurkovich JT. Community standards to facilitate development and address challenges in metabolic modeling. Mol Syst Biol. 2020 Aug;16(8):e9235. doi: 10.15252/msb.20199235. PubMed PMID: 32845080; PubMed Central PMCID: PMC8411906.

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Zhang F, Smith LP, Blinov ML, Faeder J, Hlavacek WS, Juan Tapia J, Keating SM, Rodriguez N, Dräger A, Harris LA, Finney A, Hu B, Hucka M, Meier-Schellersheim M. Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2. J Integr Bioinform. 2020 Jul 6;17(2-3). doi: 10.1515/jib-2020-0015. PubMed PMID: 32628633; PubMed Central PMCID: PMC7756619.

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Bergmann FT, Czauderna T, Dogrusoz U, Rougny A, Dräger A, Touré V, Mazein A, Blinov ML, Luna A. Systems biology graphical notation markup language (SBGNML) version 0.3. J Integr Bioinform. 2020 Jun 22;17(2-3). doi: 10.1515/jib-2020-0016. PubMed PMID: 32568733; PubMed Central PMCID: PMC7756621.

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Ostaszewski M, Mazein A, Gillespie ME, Kuperstein I, Niarakis A, Hermjakob H, Pico AR, Willighagen EL, Evelo CT, Hasenauer J, Schreiber F, Dräger A, Demir E, Wolkenhauer O, Furlong LI, Barillot E, Dopazo J, Orta-Resendiz A, Messina F, Valencia A, Funahashi A, Kitano H, Auffray C, Balling R, Schneider R. COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Sci Data. 2020 May 5;7(1):136. doi: 10.1038/s41597-020-0477-8. PubMed PMID: 32371892; PubMed Central PMCID: PMC7200764.

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Buchweitz LF, Yurkovich JT, Blessing C, Kohler V, Schwarzkopf F, King ZA, Yang L, Jóhannsson F, Sigurjónsson ÓE, Rolfsson Ó, Heinrich J, Dräger A. Visualizing metabolic network dynamics through time-series metabolomic data. BMC Bioinformatics. 2020 Apr 3;21(1):130. doi: 10.1186/s12859-020-3415-z. PubMed PMID: 32245365; PubMed Central PMCID: PMC7119163.

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Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Malik Sheriff RS, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. MEMOTE for standardized genome-scale metabolic model testing. Nat Biotechnol. 2020 Mar;38(3):272-276. doi: 10.1038/s41587-020-0446-y. PubMed PMID: 32123384; PubMed Central PMCID: PMC7082222.

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Norsigian CJ, Pusarla N, McConn JL, Yurkovich JT, Dräger A, Palsson BO, King Z. BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree. Nucleic Acids Res. 2020 Jan 8;48(D1):D402-D406. doi: 10.1093/nar/gkz1054. PubMed PMID: 31696234; PubMed Central PMCID: PMC7145653.

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Touré V, Dräger A, Luna A, Dogrusoz U, Rougny A. The Systems Biology Graphical Notation: Current Status and Applications in Systems Medicine. In: Waltemath D, editor. Reference Module in Biomedical Sciences 2020 [Internet] Oxford: Academic Press; 2020. p.372-381. Available from: https://www.sciencedirect.com/science/article/pii/B9780128012383115156?via%3Dihub.

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Dräger A, Waltemath D. Overview: Standards for Modeling in Systems Medicine. In: Wolkenhauer O, editor. Systems Medicine [Internet] Oxford: Academic Press; 2020. p.345-353. 345-353p. Available from: http://www.sciencedirect.com/science/article/pii/B9780128160770000017.

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Renz A, Mostolizadeh R. Clinical Applications of Metabolic Models in SBML Format. In: Wolkenhauer O, editor. Systems Medicine [Internet] Oxford: Academic Press; 2020. p.362-371. 362-371p. Available from: https://www.sciencedirect.com/science/article/pii/B9780128012383115247.

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Hucka M, Bergmann FT, Chaouiya C, Dräger A, Hoops S, Keating SM, König M, Novère NL, Myers CJ, Olivier BG, Sahle S, Schaff JC, Sheriff R, Smith LP, Waltemath D, Wilkinson DJ, Zhang F. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2. J Integr Bioinform. 2019 Jun 20;16(2). doi: 10.1515/jib-2019-0021. PubMed PMID: 31219795; PubMed Central PMCID: PMC6798823.

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Rougny A, Touré V, Moodie S, Balaur I, Czauderna T, Borlinghaus H, Dogrusoz U, Mazein A, Dräger A, Blinov ML, Villéger A, Haw R, Demir E, Mi H, Sorokin A, Schreiber F, Luna A. Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J Integr Bioinform. 2019 Jun 13;16(2). doi: 10.1515/jib-2019-0022. Review. PubMed PMID: 31199769; PubMed Central PMCID: PMC6798820.

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Romano P, Céol A, Dräger A, Fiannaca A, Giugno R, La Rosa M, Milanesi L, Pfeffer U, Rizzo R, Shin SY, Xia J, Urso A. The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. BMC Bioinformatics. 2019 Apr 18;20(Suppl 4):125. doi: 10.1186/s12859-019-2681-0. PubMed PMID: 30999855; PubMed Central PMCID: PMC6472292.

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Neal ML, König M, Nickerson D, Mısırlı G, Kalbasi R, Dräger A, Atalag K, Chelliah V, Cooling MT, Cook DL, Crook S, de Alba M, Friedman SH, Garny A, Gennari JH, Gleeson P, Golebiewski M, Hucka M, Juty N, Myers C, Olivier BG, Sauro HM, Scharm M, Snoep JL, Touré V, Wipat A, Wolkenhauer O, Waltemath D. Harmonizing semantic annotations for computational models in biology. Brief Bioinform. 2019 Mar 22;20(2):540-550. doi: 10.1093/bib/bby087. Review. PubMed PMID: 30462164; PubMed Central PMCID: PMC6433895.

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Mostolizadeh R, Dräger A, Jamshidi N. Insights into Dynamic Network States Using Metabolomic Data. Methods Mol Biol. 2019;1978:243-258. doi: 10.1007/978-1-4939-9236-2_15. PubMed PMID: 31119667.

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Gao Y, Yurkovich JT, Seo SW, Kabimoldayev I, Dräger A, Chen K, Sastry AV, Fang X, Mih N, Yang L, Eichner J, Cho BK, Kim D, Palsson BO. Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655. Nucleic Acids Res. 2018 Nov 16;46(20):10682-10696. doi: 10.1093/nar/gky752. PubMed PMID: 30137486; PubMed Central PMCID: PMC6237786.

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Hucka M, Bergmann FT, Dräger A, Hoops S, Keating SM, Le Novère N, Myers CJ, Olivier BG, Sahle S, Schaff JC, Smith LP, Waltemath D, Wilkinson DJ. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core. J Integr Bioinform. 2018 Mar 9;15(1). doi: 10.1515/jib-2017-0081. PubMed PMID: 29522418; PubMed Central PMCID: PMC6167032.

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Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlić A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, Rose PW, Burley SK, Fleming RMT, Nielsen J, Thiele I, Palsson BO. Recon3D enables a three-dimensional view of gene variation in human metabolism. Nat Biotechnol. 2018 Mar;36(3):272-281. doi: 10.1038/nbt.4072. Epub 2018 Feb 19. PubMed PMID: 29457794; PubMed Central PMCID: PMC5840010.

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Yurkovich JT, Yurkovich BJ, Dräger A, Palsson BO, King ZA. A Padawan Programmer's Guide to Developing Software Libraries. Cell Syst. 2017 Nov 22;5(5):431-437. doi: 10.1016/j.cels.2017.08.003. Epub 2017 Oct 4. PubMed PMID: 28988801.

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Du B, Zielinski DC, Kavvas ES, Dräger A, Tan J, Zhang Z, Ruggiero KE, Arzumanyan GA, Palsson BO. Evaluation of rate law approximations in bottom-up kinetic models of metabolism. BMC Syst Biol. 2016 Jun 6;10(1):40. doi: 10.1186/s12918-016-0283-2. PubMed PMID: 27266508; PubMed Central PMCID: PMC4895898.

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Scranton MA, Ostrand JT, Georgianna DR, Lofgren SM, Li D, Ellis RC, Carruthers DN, Dräger A, Masica DL, Mayfield SP. Synthetic promoters capable of driving robust nuclear gene expression in the green alga Chlamydomonas reinhardtii. Algal research. 2016 February; 15:135-142. doi: 10.1016/j.algal.2016.02.011.

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Römer M, Eichner J, Dräger A, Wrzodek C, Wrzodek F, Zell A. ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis. PLoS One. 2016;11(2):e0149263. doi: 10.1371/journal.pone.0149263. eCollection 2016. PubMed PMID: 26882475; PubMed Central PMCID: PMC4801062.