U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC107017796 alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [ Solanum pennellii ]

    Gene ID: 107017796, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC107017796
    Gene description
    alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum pennellii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current SPENNV200 (GCF_001406875.1) 4 NC_028640.1 (63250966..63256317)

    Chromosome 4 - NC_028640.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic Neighboring gene auxin-responsive protein IAA4-like Neighboring gene pentatricopeptide repeat-containing protein At2g22070 Neighboring gene TGACG-sequence-specific DNA-binding protein TGA-1A-like Neighboring gene transfer RNA valine (anticodon CAC)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_028640.1 Chromosome 4 Reference SPENNV200

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alanine-glyoxylate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-alanine catabolic process, by transamination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glyoxylate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial
    Names
    mitochondrial alanine-glyoxylate transaminase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Solanum pennellii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SPENNV200

    Genomic

    1. NC_028640.1 Reference SPENNV200

      Range
      63250966..63256317
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015218062.2 → XP_015073548.1  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial isoform X1

      Conserved Domains (2) summary
      cd00610
      Location:61 → 468
      OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...
      COG0160
      Location:59 → 471
      GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]

    2. XM_015218064.2 → XP_015073550.1  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial isoform X2

      Conserved Domains (2) summary
      cd00610
      Location:3 → 385
      OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...
      TIGR00707
      Location:3 → 385
      argD; transaminase, acetylornithine/succinylornithine family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases