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    MSANTD5 Myb/SANT DNA binding domain containing 5 [ Homo sapiens (human) ]

    Gene ID: 102724657, updated on 10-Mar-2024

    Summary

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    Official Symbol
    MSANTD5provided by HGNC
    Official Full Name
    Myb/SANT DNA binding domain containing 5provided by HGNC
    Primary source
    HGNC:HGNC:55184
    See related
    Ensembl:ENSG00000285891 AllianceGenome:HGNC:55184
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    mouse all
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    Genomic context

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    Location:
    5q35.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (178691534..178707472, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (179243565..179259503, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (178121573..178124762, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:178052997-178053677 Neighboring gene CDC like kinase 4 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:178057087-178058286 Neighboring gene RN7SK pseudogene 70 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:178070356-178071555 Neighboring gene vomeronasal 2 receptor 2 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178150344-178150844 Neighboring gene MPRA-validated peak5604 silencer Neighboring gene zinc finger protein 354A Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16722 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16723 Neighboring gene acetoacetyl-CoA synthetase pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative uncharacterized protein MSANTD5
    Names
    Myb/SANT DNA binding domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001395436.2 → NP_001382365.1  putative uncharacterized protein MSANTD5

      Status: VALIDATED

      Source sequence(s)
      AC113348
      Consensus CDS
      CCDS93835.1
      UniProtKB/Swiss-Prot
      A0A3B3IT52
      Related
      ENSP00000497547.1, ENST00000648368.2
      Conserved Domains (1) summary
      pfam13837
      Location:37 → 86
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      178691534..178707472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017010138.1 → XP_016865627.1  putative uncharacterized protein MSANTD5 isoform X1

      UniProtKB/Swiss-Prot
      A0A3B3IT52
      Conserved Domains (1) summary
      pfam13837
      Location:37 → 86
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    RNA

    1. XR_007058568.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      179243565..179259503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054351413.1 → XP_054207388.1  putative uncharacterized protein MSANTD5 isoform X1

      UniProtKB/Swiss-Prot
      A0A3B3IT52

    RNA

    1. XR_008487069.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A3B3IT52.1 GenPept UniProtKB/Swiss-Prot:A0A3B3IT52

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