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    LINC01811 long intergenic non-protein coding RNA 1811 [ Homo sapiens (human) ]

    Gene ID: 101928114, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01811provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1811provided by HGNC
    Primary source
    HGNC:HGNC:52615
    See related
    Ensembl:ENSG00000226320 AllianceGenome:HGNC:52615
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    3p22.3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (34159364..34436096)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (34160056..34436832)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:33840285-33840818 Neighboring gene programmed cell death 6 interacting protein Neighboring gene uncharacterized LOC105377024 Neighboring gene NANOG hESC enhancer GRCh37_chr3:33960144-33960645 Neighboring gene MPRA-validated peak4603 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:34030184-34030786 Neighboring gene Sharpr-MPRA regulatory region 5398 Neighboring gene Sharpr-MPRA regulatory region 2911 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:34131647-34132146 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19654 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14193 Neighboring gene NANOG hESC enhancer GRCh37_chr3:34232828-34233329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19655 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19656 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19658 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:34459799-34460382 Neighboring gene MPRA-validated peak4607 silencer Neighboring gene uncharacterized LOC124909364 Neighboring gene uncharacterized LOC102724048

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide association study of chronic periodontitis in a general German population. Teumer A, et al. J Clin Periodontol, 2013 Nov. PMID 24024966
    2. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. Fox CS, et al. PLoS Genet, 2012. PMID 22589738, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
    EBI GWAS Catalog
    Genome-wide association study of chronic periodontitis in a general German population.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • AC018359.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183676.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023
      Related
      ENST00000670158.1

    2. NR_183677.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023
      Related
      ENST00000659000.1

    3. NR_183678.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023
      Related
      ENST00000670897.1

    4. NR_183679.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023

    5. NR_183680.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023
      Related
      ENST00000659868.1

    6. NR_183681.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023
      Related
      ENST00000660133.1

    7. NR_183682.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099776, AC123023
      Related
      ENST00000655439.1

    8. NR_183683.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023
      Related
      ENST00000660092.1

    9. NR_183684.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023
      Related
      ENST00000665711.1

    10. NR_183685.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023
      Related
      ENST00000670306.1

    11. NR_183686.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC099776, AC123023

    12. NR_183687.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC123023
      Related
      ENST00000664996.1

    13. NR_183688.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC123023
      Related
      ENST00000671575.1

    14. NR_183689.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC123023
      Related
      ENST00000655660.1

    15. NR_183690.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC123023
      Related
      ENST00000665018.1

    16. NR_183691.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092023, AC123023

    17. NR_183695.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123023

    18. NR_183696.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123023

    19. NR_183697.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123023

    20. NR_183698.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123023

    21. NR_183699.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC123023

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      34159364..34436096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      34160056..34436832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases