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    LOC100507548 uncharacterized LOC100507548 [ Homo sapiens (human) ]

    Gene ID: 100507548, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC100507548
    Gene description
    uncharacterized LOC100507548
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    11q25
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (134985352..134986799)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (135033271..135034718)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (134855246..134856693)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 2456 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:134617746-134618945 Neighboring gene NANOG hESC enhancer GRCh37_chr11:134618982-134619663 Neighboring gene long intergenic non-protein coding RNA 2714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134671658-134672158 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:134721213-134722412 Neighboring gene Sharpr-MPRA regulatory region 927 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134775628-134776555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134811107-134811935 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134817200-134817700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134817701-134818201 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:134818754-134819953 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:134831501-134832001 Neighboring gene long intergenic non-protein coding RNA 2697 Neighboring gene uncharacterized LOC105369587 Neighboring gene long intergenic non-protein coding RNA 2717 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134906565-134907193 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:134908884-134909384 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134938655-134939156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5776 Neighboring gene long intergenic non-protein coding RNA 2684

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135050.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK130852

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      134985352..134986799
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      135033271..135034718
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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