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    LOAG_03310 hypothetical protein [ Loa loa (eye worm) ]

    Gene ID: 9940698, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOAG_03310
    Gene description
    hypothetical protein
    Locus tag
    LOAG_03310
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Loa loa
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Spirurina; Spiruromorpha; Filarioidea; Onchocercidae; Loa
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    18

    NW_018108389.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L11 Neighboring gene vacuolar h ATPase 15 Neighboring gene glutaminase 2 Neighboring gene nuclear pore protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018108389.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in membrane protein ectodomain proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_018108389.1 Reference assembly

      Range
      54693..61767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020446281.1 → XP_020303356.1  hypothetical protein LOAG_03310 [Loa loa]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1I7VWE1, A0A1S0U4G3
      Conserved Domains (4) summary
      cd14246
      Location:545 → 605
      ADAM17_MPD; Membrane-proximal domain of a disintegrin and metalloprotease 17 (ADAM17)
      pfam00200
      Location:450 → 523
      Disintegrin; Disintegrin
      pfam01562
      Location:45 → 136
      Pep_M12B_propep; Reprolysin family propeptide
      cl00064
      Location:189 → 435
      ZnMc; Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which ...

    2. XM_020446282.1 → XP_020305450.1  hypothetical protein, variant [Loa loa]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1S0UI89
      Conserved Domains (3) summary
      pfam00200
      Location:450 → 523
      Disintegrin; Disintegrin
      pfam01562
      Location:45 → 136
      Pep_M12B_propep; Reprolysin family propeptide
      cl00064
      Location:189 → 435
      ZnMc; Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which ...
    Nucleotide Protein
    Heading Accession and Version

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