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    LOC9629681 leucine--tRNA ligase, cytoplasmic [ Selaginella moellendorffii ]

    Gene ID: 9629681, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9629681
    Gene description
    leucine--tRNA ligase, cytoplasmic
    Locus tag
    SELMODRAFT_77212
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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    Genomic context

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    See LOC9629681 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314262.1 (1158607..1162206)

    NW_003314262.1Genomic Context describing neighboring genes Neighboring gene BRCA1-associated RING domain protein 1-like Neighboring gene putative septum site-determining protein minD homolog, chloroplastic Neighboring gene titin Neighboring gene nuclear pore complex protein NUP98A Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 8 Neighboring gene growth hormone-regulated TBC protein 1 Neighboring gene uncharacterized protein At4g13200, chloroplastic-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314262 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables aminoacyl-tRNA editing activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables leucine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in leucyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine--tRNA ligase, cytoplasmic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314262.1 Reference v1.0

      Range
      1158607..1162206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002961374.2 → XP_002961420.1  leucine--tRNA ligase, cytoplasmic

      See identical proteins and their annotated locations for XP_002961420.1

      UniProtKB/TrEMBL
      D8QTN5, D8T3V3
      Conserved Domains (4) summary
      cd07959
      Location:755 → 876
      Anticodon_Ia_Leu_AEc; Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases
      cd00812
      Location:530 → 756
      LeuRS_core; catalytic core domain of leucyl-tRNA synthetases
      PLN02959
      Location:4 → 1076
      PLN02959; aminoacyl-tRNA ligase
      cl00015
      Location:49 → 239
      nt_trans; nucleotidyl transferase superfamily
    Nucleotide Protein
    Heading Accession and Version

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