U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC9326266 ubiquitin carboxyl-terminal hydrolase 15 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9326266, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC9326266
    Gene description
    ubiquitin carboxyl-terminal hydrolase 15
    Locus tag
    ARALYDRAFT_889106
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    UBP15
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC9326266 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (7151960..7157250, complement)

    NW_003302555.1Genomic Context describing neighboring genes Neighboring gene probable prefoldin subunit 5 Neighboring gene heme-binding protein 2 Neighboring gene cationic amino acid transporter 8, vacuolar Neighboring gene coiled-coil domain-containing protein 94 homolog Neighboring gene interactor of constitutive active ROPs 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 15
    Names
    ubiquitin-specific protease 15

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302555.1 Reference v.1.0 Primary Assembly

      Range
      7151960..7157250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021011437.1 → XP_020867096.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

      Conserved Domains (2) summary
      cd02661
      Location:445 → 750
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger

    2. XM_002892889.2 → XP_002892935.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X2

      See identical proteins and their annotated locations for XP_002892935.1

      UniProtKB/TrEMBL
      D7KEL9
      Conserved Domains (2) summary
      cd02661
      Location:441 → 746
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger

    3. XM_021011440.1 → XP_020867099.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X2

      UniProtKB/TrEMBL
      D7KEL9
      Conserved Domains (2) summary
      cd02661
      Location:441 → 746
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger

    4. XM_021011438.1 → XP_020867097.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

      Conserved Domains (2) summary
      cd02661
      Location:445 → 750
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger

    5. XM_021011439.1 → XP_020867098.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

      Conserved Domains (2) summary
      cd02661
      Location:445 → 750
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:130 → 167
      zf-MYND; MYND finger
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials