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    LOC9319520 transcription factor bHLH77 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9319520, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9319520
    Gene description
    transcription factor bHLH77
    Locus tag
    ARALYDRAFT_673367
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9319520 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (11007497..11010160, complement)

    NW_003302553.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At4g33290 Neighboring gene F-box protein At2g38590 Neighboring gene 30S ribosomal protein S1 Neighboring gene protein TIC 22-like, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH77
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302553.1 Reference v.1.0 Primary Assembly

      Range
      11007497..11010160 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021031570.1 → XP_020887229.1  transcription factor bHLH77

      UniProtKB/TrEMBL
      D7L3G1
      Conserved Domains (2) summary
      smart00353
      Location:206 → 255
      HLH; helix loop helix domain
      pfam07218
      Location:87 → 225
      RAP1; Rhoptry-associated protein 1 (RAP-1)
    Nucleotide Protein
    Heading Accession and Version

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